Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_002730.1 Length=38297 Score E Sequences producing significant alignments: (Bits) Value seq4764 194 4e-45 seq2795 114 3e-21 >seq4764 Length=15780 Score = 194 bits (214), Expect = 4e-45 Identities = 323/459 (70%), Gaps = 12/459 (3%) Strand=Plus/Plus Query 33825 TCATACAATGAGCAGCGAGAATGGTGTTTTGCATGTGATAGGCGTGTTCAATGGCAAACT 33884 || ||| |||| || || | ||||||| ||||| | || ||||| ||||||| |||| Sbjct 11108 TCGTACCGTGAGTAGTGAAAGTGGTGTTCTGCATATTATTGGCGTATTCAATGACAAAAA 11167 Query 33885 ATCTACTATTGCCCATGAGTGCGCTCACATGGCATTCGATATCTGCTCA-AGGGTAGGTG 33943 || || | || ||||| ||||| || | || ||||||||||| ||| | || |||| Sbjct 11168 CTCGACATTAGCTCATGAATGCGCCCATGTTGCTTTCGATATCTG-TCATCGTGTTGGTG 11226 Query 33944 TTGATGTTGAACCAGGAAGAGCCAACGAGACTTACTGCTACTTAATGAGCAGGCTTGTTG 34003 | |||| |||| || || ||||| | |||||| | || ||||| | |||| Sbjct 11227 TGAATGTGAGTACAGGTGAGGCAAATGAGACATTTTGCTACCTGATAAGCAGATTGGTTG 11286 Query 34004 AGTTCTGCGAGCGACATATCAAAAAGCCGGAGTGACCCGGCTTGATTATTACTT----TT 34059 |||| |||||| | ||||||||||||||||||||||||||| | | |||||| | Sbjct 11287 AGTTTTGCGAGAAGCCTATCAAAAAGCCGGAGTGACCCGGCTT-AGTTTTACTTACCGCT 11345 Query 34060 TGCTGTCTGGAGTTCGCTTATCTAATACCCAGCCATGACCTGGCTTTGTTGTTGGCGGAA 34119 |||| | ||||||| ||||| | | |||| | ||| | || | |||||| || | Sbjct 11346 TGCTATTGGGAGTTCTTTTATCAAGTTCCCAAGTGTTACCGGATTTAGATGTTGGTGGCA 11405 Query 34120 GCCTTTCGTTGTCCTTGACGGTGGCAAAATTGTCTTTCTTACCGCCGCGCGGGCCAACTT 34179 ||||||| ||| | || ||||| ||||| || | || ||||| || || || |||| Sbjct 11406 ATTTTTCGTTATCCCTTACAGTGGCGAAATTATCAGTTTTGCCGCCACGAGGACCTACTT 11465 Query 34180 ATTGGTATATACCGCCGTTTTTTCCCGTGTTTTCACCTGGTTTTTTCGCCATGATATACC 34239 | || |||||||| | || || || ||||| || || || || |||| || | | Sbjct 11466 CACGATAGATACCGCCATCCTTACCAGTATTTTCTCCGGGCTTCTTACCCATAAT-GATC 11524 Query 34240 TCAACA---TACACCCGTTATTGGGCGA-TTAAATATTG 34274 || | | | ||| || ||||| || | |||||||||| Sbjct 11525 TCCATATTGTTCACTCGATATTGAGCCAGTTAAATATTG 11563 >seq2795 Length=11366 Score = 114 bits (126), Expect = 3e-21 Identities = 141/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 14062 AATGGTTAACCTACGCAAAGAAGCGCGCGGCAGAGAATGCCAGGTACGTATTTACGGCGT 14121 ||||| || ||||||||||||||||| || ||||||| ||||| | || ||| | Sbjct 3919 AATGGCAAATCTACGCAAAGAAGCGCGGGGTCGAGAATGTCAGGTCAGAATACCGGGCAT 3860 Query 14122 ATGCAATGGTAATCCTGAAACTACAGTTCTGGCACATTACCGGATGGCTGGAATTTGCGG 14181 || || ||||| ||||| ||||||||| ||||||||||||||||| ||||| || Sbjct 3859 CTGTAACGGTAACAGCGAAACGGTAGTTCTGGCTCATTACCGGATGGCTGGCATTTGTGG 3800 Query 14182 AACTGGAATGAAGCCTGACGACCTGATCGGTGCATGGGCTTG-TAGTGACTGCCACGCGG 14240 | || ||||| || | || ||| | || |||||||| || | ||| || |||| | Sbjct 3799 CATGGGGATGAAACCCAATGATCTGTTTGGGGCATGGGCGTGTTCGTG-TTGTCACGATG 3741 Query 14241 AAATCGACCG 14250 |||| ||||| Sbjct 3740 AAATAGACCG 3731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122408079843816