Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq13049 118 8e-22 seq7750 116 3e-21 seq8226 105 5e-18 seq12388 104 2e-17 seq10049 96.9 3e-15 >seq13049 Length=11502 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || ||||| || ||||||||||| ||| ||| | || || Sbjct 10518 ACCAAGTGCAGAGTCGATTCCTTTTGTATGTTGTAGTCAGACAGGGTGCGGCCATCCTCA 10459 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||||||||||||||| ||||| |||||||| |||||||| | ||||| |||||| | Sbjct 10458 AGTTGTTTTCCGGCGAAGATCAATCGCTGTTGATCGGGAGGGATTCCCTCTTTGTCCTGA 10399 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || || || | | | |||||| | || || || | || ||||| || Sbjct 10398 ATCTTGGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGACTTCGAGAGTGATCGTTTTA 10339 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || |||||||| ||||| |||||| Sbjct 10338 CCAGTGAGGGTCTTCACGAAGATCTGCATG 10309 >seq7750 Length=8304 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||| || ||||||||||||||| || || |||| || || || ||||||||||| Sbjct 2745 CTCTTTTTGAATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCAAGCTGCTTTCCGGCGAA 2804 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| ||||||||||| || || | || ||||||||| || || |||||| Sbjct 2805 GATCAAACGCTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTT 2864 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | || ||||| | |||||| ||||| || || ||||||||||| Sbjct 2865 CTCGATTGTGTCAGAGGCTTCTACCTCGAGGGTAATGGTCTTTCCAGTAAGAGTCTTCAC 2924 Query 45325 AAAGATTTGCAT 45336 |||||||||||| Sbjct 2925 AAAGATTTGCAT 2936 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| |||| ||| |||||||||||||||||| ||| ||| ||| |||| || Sbjct 1515 ACCAAATGCAAGGTGGACTCCTTCTGAATGTTGTAATCGGAGAGTGTACGACCGTCCTCG 1574 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| ||||||||||| ||||| ||||| || || || || | || ||||| ||| Sbjct 1575 AGTTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGCGGAATTCCTTCCTTATCCTGG 1634 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | || || |||| || || ||||| Sbjct 1635 ATCTTGGCCTTGACGTTCTCGATAGTGTCGGATGCTTCAACTTCCAGAGTGATTGTCTTT 1694 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| || ||||| ||||| Sbjct 1695 CCGGTGAGGGTCTTAACGAAGATCTGCAT 1723 >seq8226 Length=1064 Score = 105 bits (116), Expect = 5e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 45157 GTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTG 45216 |||||||||| || ||| |||| || ||||||||||| ||||| ||||| ||||| Sbjct 605 GTTGTAGTCGGACAAGGTGCGGCCGTCCTCAAGTTGTTTTCCAGCGAAGATCAATCGCTG 664 Query 45217 TTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTC 45276 ||||| ||||| | ||| |||||||| ||| || ||| || | | |||||| Sbjct 665 CTGGTCTGGAGGGATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTTTCAATGCTGTC 724 Query 45277 CCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || || || | |||||| |||||||| || || ||||| ||||| |||||||| Sbjct 725 TGAGGCTTCGACTTCTAAGGTAATTGTCTTGCCAGTAAGGGTCTTGACAAAAATTTGCAT 784 Query 45337 G 45337 | Sbjct 785 G 785 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||| ||||| || || ||| | || |||| |||||||||||||| Sbjct 821 CTCCTTCTGAATATTGTAATCAGAAAGGGTGCGGCCATCTTCCAACTGTTTTCCGGCGAA 880 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| ||||| ||||| || || | |||||||||||| ||| || ||| || Sbjct 881 GATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTT 940 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | ||| || | || || || | || || || || || |||| ||||| || Sbjct 941 TTCAATGCTATCAGAGGCTTCGACTTCGAGAGTGATTGTTTTACCAGTCAACGTCTTGAC 1000 Query 45325 AAAGATTTGCATG 45337 ||||||||||||| Sbjct 1001 AAAGATTTGCATG 1013 >seq12388 Length=21549 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||||| ||||| || ||| ||| | || || Sbjct 15998 ACCAAGTGAAGAGTCGATTCCTTCTGAATATTGTAATCAGACAGGGTGCGGCCATCTTCA 15939 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| || | |||||||| |||||||| | |||||||||||| Sbjct 15938 AGCTGCTTTCCGGCGAAGATGAGACGCTGTTGATCGGGAGGGATTCCCTCCTTGTCCTGG 15879 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || | | | |||||| | || || || | ||| ||||| || Sbjct 15878 ATTTTGGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGACTTCGAGGGTGATCGTTTTA 15819 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| ||||| ||||| ||||||||| Sbjct 15818 CCAGTCAACGTCTTGACAAAAATTTGCATG 15789 >seq10049 Length=10599 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||| ||||||||| || ||| |||| || || || ||||||||||| Sbjct 9207 CTCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCGTCTTCAAGCTGCTTTCCGGCGAA 9266 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| ||||| ||||| || || | || ||||||||| || || ||| || Sbjct 9267 GATCAATCGCTGCTGGTCTGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 9326 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||| || | || || || | || || || || || || || |||||||| Sbjct 9327 CTCAATGCTATCAGAGGCTTCGACTTCGAGAGTGATGGTTTTACCAGTGAGGGTCTTCAC 9386 Query 45325 AAAGATTTGCATGTTG 45340 ||||| ||||||||| Sbjct 9387 GAAGATCTGCATGTTG 9402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395006576919292