Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq4423 354 2e-93 seq7349 244 2e-60 seq11062 183 7e-42 seq7043 163 6e-36 seq10415 138 3e-28 seq6114 132 1e-26 seq5286 113 1e-20 seq11087 86.0 1e-12 >seq4423 Length=667 Score = 354 bits (392), Expect = 2e-93 Identities = 260/301 (86%), Gaps = 6/301 (2%) Strand=Plus/Minus Query 3235 ATCTGGCGCCAGATGCGGTCCTCGCACAGTCGCCCTTGCTGCAGGGCGTCATGACTTACG 3294 |||||||||||||| || |||||||| || ||||| ||||||||||||| || ||| Sbjct 298 ATCTGGCGCCAGATCCGATCCTCGCAGAGCCGCCCCTGCTGCAGGGCGTTGTGGGACACG 239 Query 3295 TCGATCTTGATGCGATCGGCGGCCGGCTTGCCCTTGTTGAAGCGCTCGCCAGTCCAGAAT 3354 |||| |||||| || | || ||||| ||||||||||||||||||||||| |||||||| Sbjct 238 TCGAGCTTGATCCGCTGCGCCGCCGGTTTGCCCTTGTTGAAGCGCTCGCCGGTCCAGAAG 179 Query 3355 GTGTAGGCCTCATGCGCCAT---CGAACTGGGCGTCGAGAAGTAGGTCCGGCGGTAGCGC 3411 ||||||||||| || ||||| ||| |||||||||||||||||||||||||| || Sbjct 178 GTGTAGGCCTCGTGTGCCATGCTCGAT---GGCGTCGAGAAGTAGGTCCGGCGGTACTGC 122 Query 3412 TTCTGCATCGCCATACCGCTGGCGACCTTGTTCAGCTCCTTGAACTTGAACGTCCAGAAG 3471 |||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||| Sbjct 121 TTCTGCATCGCCATGCCGCTGGCGACCTTGTTGAGTTCCTTGAACTTGAAGGTCCAGAAG 62 Query 3472 AACTCGTCGAAGTAGAAGTTGCCGTGGTAGCCCTGGGCAGTCCGCGCGTTGGTGCCGAGG 3531 || ||||||||||||||||||||||| ||||||||||| ||||| |||||||| || ||| Sbjct 61 AATTCGTCGAAGTAGAAGTTGCCGTGATAGCCCTGGGCGGTCCGGGCGTTGGTCCCCAGG 2 Query 3532 A 3532 | Sbjct 1 A 1 Score = 288 bits (318), Expect = 2e-73 Identities = 216/254 (85%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 2953 ACCACCAGACCCGCGGTGTCGCCCGTCTCGGCGGGGTCATAGCCCAGCCACACCTGGCGA 3012 ||||||| |||||| ||||||| | || || ||||||||||||| ||| ||||||||| Sbjct 646 ACCACCATGCCCGCGCTGTCGCCGTTTTCCGCCGGGTCATAGCCCACCCAGACCTGGCGA 587 Query 3013 TCACCGAACGGCCGCAGCGCGAACGGCTTGTAGTCCTCCGACCACAGGTCCCAGCTATCG 3072 |||||||||||||| ||||| || ||||||||||| | ||| |||||||| || || Sbjct 586 TCACCGAACGGCCGTGCGGCGAAGGGTTTGTAGTCCTCTGCCCAGAGGTCCCAACTGTCC 527 Query 3073 ACCATGCACGGCTGCAGCATGGTCAACGGGAAAATGCTCGCGCCGTCGTCGACGAACTGG 3132 |||||||| ||||||| ||| | || ||||| |||||||| |||||||||| ||||||| Sbjct 526 ACCATGCAGGGCTGCAACATCGCCAGGGGGAAGATGCTCGCCCCGTCGTCGATGAACTGG 467 Query 3133 CACATCAGCAGGTTCTGGAAAGCCTCGGCGTCGTACTCGAGACGCAGCTCGTCGATGTCG 3192 |||||||||||||||||||| ||||||||||||||||| || | ||||||||| | |||| Sbjct 466 CACATCAGCAGGTTCTGGAAGGCCTCGGCGTCGTACTCAAGCCTCAGCTCGTCCAGGTCG 407 Query 3193 AACAGATCGCAGCC 3206 |||||||| ||||| Sbjct 406 AACAGATCACAGCC 393 >seq7349 Length=757 Score = 244 bits (270), Expect = 2e-60 Identities = 267/354 (75%), Gaps = 3/354 (1%) Strand=Plus/Minus Query 28897 GAGTGCCGCCGAGAAGGCCCTGCTGATGTACGACTGGGGCAAGCGCGGTGAATTCCACTT 28956 ||| ||| |||| ||||| |||| |||||| | ||| || | |||| || |||||||| Sbjct 757 GAGCGCCACCGACAAGGCGTTGCTCATGTACCAGTGGCGCGAACGCGAGGAGTTCCACTT 698 Query 28957 CCGCTTCGCCAACCGCCTCTACTGGTTCAAGCTGGATATCGAGAAGTTCAACAAGGCCAT 29016 | |||||| | |||||| ||||||| ||| |||| | | |||||||||| |||| Sbjct 697 CTGCTTCGACTCCCGCCTGTACTGGTGGAAGTTGGACCTTGCCAAGTTCAACAGCGCCAA 638 Query 29017 GCAGAGCCTCGAGGACAGCGACAACCACGACGACCAATTGCTGAACCAGAAACAGATGCG 29076 |||| ||| ||| | |||||| |||| |||| |||| | || ||| || || |||| Sbjct 637 GCAGGCCCTGGAGAAAAGCGACGACCAAGACGCCCAAGTCCTTAACGAGCGGCAACTGCG 578 Query 29077 CGACAAGGCCCTGCAGCAAGCCGGCGGCGTCGTGGAAATCGCCAACTGCTTCCCCCAGGC 29136 || || || || | |||||| ||||||| |||||||||||||||| |||| |||| Sbjct 577 GGAGAAAGCGTTGAACGTTGCCGGCTGCGTCGTCGAAATCGCCAACTGCTACCCCAAGGC 518 Query 29137 CCTGTACTTCCAGCGCAACGAGGTCACAGACGAGAGCTGGTACTACTTCCGCATCGATCG 29196 ||||| |||||||||||||| | || |||||| |||||||| |||||| |||| Sbjct 517 TCTGTATTTCCAGCGCAACGAAATTACGGACGAGTCCTGGTACTTCTTCCGGGTCGACTT 458 Query 29197 CCCCGACGACGAGAGC---GTGAAGAACACCTTCACCAGTGCCCAGGTCGCGGC 29247 ||| |||||| || |||||||||||||||||| ||| |||||||| || Sbjct 457 CCCTCACGACGGCGGCTCAGTGAAGAACACCTTCACCGGTGGTCAGGTCGCCGC 404 Score = 89.7 bits (98), Expect = 1e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 29280 TGGCCGCCGGTGCGATCTTCACCGGCAGCGGCGCGCAGCTTGACCAGATCATGAAGCTGC 29339 ||||||| || || | ||||||||||||||| |||| | ||| ||||||||||| | Sbjct 314 TGGCCGCAGGAGCCGTATTCACCGGCAGCGGCCAGCAGTTGGACAAGATCATGAAGGACC 255 Query 29340 AGCTCACCGGCTTGAAGACGGTGGCCACCATCGATTACCTGGGCTACAGCCGGGAGCATG 29399 |||| || | | || || ||| |||||||| ||| | ||||||||| ||| | | Sbjct 254 AGCTGTACGCCATCAAAACCGTGCAGACCATCGACTACGTCGGCTACAGCAAGGAATACG 195 Query 29400 CCTGCTACGTTCTGGGCGACGTGGCGGTGCGCGGCGGCGTGATCGAGAAGGCCAACGCCG 29459 ||||||||| | ||| | || || |||| ||| | || | ||||| | Sbjct 194 GCTGCTACGTCTTCAACGATATAGCCGTTCGCGAGGGCCAGCTCATCAGCATCAACGAGG 135 Query 29460 AAGACTTCTTCGAGTTCCAGAAGCTGCGCCTGAAGACCCTGCAG 29503 | || ||||||||| | ||||| |||||| | |||||| Sbjct 134 AGGAGTTCTTCGAGATGGGCAAGCTCAAGCTGAAGTCGCTGCAG 91 >seq11062 Length=2017 Score = 183 bits (202), Expect = 7e-42 Identities = 181/234 (77%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 17309 GCCTTGCTTGCCGCCAAGGCCCGCTTGGGCGTGGTACCGCGCATCCTCGGCGTGCCGGGC 17368 ||| | || |||||||||||||| | || |||| |||||||| || |||||||| ||| Sbjct 296 GCCCTCCTCGCCGCCAAGGCCCGTGTCGGTTTGGTGCCGCGCATTCTTGGCGTGCCAGGC 237 Query 17369 CTGGATACCCAGCCGGTCGCTACCGCACTCATCGCCATCGCCCAGCAACTGCGCGCCTTC 17428 || || | || |||||| || ||||| || || | |||| |||||| |||| |||||| Sbjct 236 CTCGACAGCCTGCCGGTAGCCACCGCCCTGGTCTCGATCGGCCAGCAGTTGCGGGCCTTC 177 Query 17429 GCTTATGTCTCCGCCAGCGGCTGCAAGACAAAGGAAGAGGCCACCGCCTACCGCGAGAAC 17488 |||||| |||| | | | ||||||| || || || ||| |||||||||||||||| Sbjct 176 TGCTATGTCAGCGCCTGGGACAGCAAGACCAAAGAGGAAGCCGTCGCCTACCGCGAGAAC 117 Query 17489 TTCGCCGCGCGCGAAGCCATGGTGATCTGGCCGGACTTCCTGACGTGGAGCACC 17542 |||| || || ||||| |||||||||||||| ||||||| | |||| |||| Sbjct 116 TTCGGTGCACGAGAAGCAATGGTGATCTGGCCTGACTTCCAAAACTGGAACACC 63 Score = 107 bits (118), Expect = 4e-19 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 17037 TCGCCACCGCGATCATCGGCCTGGTAGCCACCGCCGAAGACGCCGACGCCACCGCCTTTC 17096 || ||||||| | ||||||||| | ||| ||||| |||||||| | || || | Sbjct 666 TCCCCACCGCTGTTATCGGCCTGATTTGCACTGCCGACGACGCCGATCCGCTGGCATTCC 607 Query 17097 CACTCGATACGCCGGTACTCATCACCAACGTGCAGGCTGCCATCGGCAAGGCGGGCACCA 17156 | |||||||| ||||| || | |||||||| ||| | || |||| || || ||||||| Sbjct 606 CGCTCGATACCCCGGTCCTGCTGACCAACGTTCAGACCGCGGTCGGTAAAGCCGGCACCA 547 Query 17157 GCGGTACGCTGCCCGCAAGCCTGCAAGCAATCGCCGACCAGGCCAACGCCGCCACTGTGG 17216 || || ||| ||| || || || || |||||||||||| |||| || | | | Sbjct 546 AGGGCACCCTGGGCGCCAGTCTCCAGGCCATCGCCGACCAGACCAAGCCCTACGTCATCG 487 Query 17217 TGGTGCGGGTGAAGCCGGGCGAGGATGAAGCCGCGACCA 17255 | || ||||| ||| ||||| ||||| ||||||| Sbjct 486 TTGTACGGGTCAAGAGCGGCGAAACCGAAGCAGCGACCA 448 Score = 95.1 bits (104), Expect = 3e-15 Identities = 107/141 (76%), Gaps = 8/141 (6%) Strand=Plus/Minus Query 16892 TCCCGCCTCGCCCCTTCGCCGCGCGCGCGGCAGCCTGTGCAGTGTCA-TCCAACCACTGC 16950 |||||| | ||||| ||||||||||||||||||||||| ||||| ||| |||||| Sbjct 860 TCCCGC-TAGCCCCAGTCCCGCGCGCGCGGCAGCCTGTGCACTGTCACCCCATTCACTGC 802 Query 16951 ACAGGCACACCCCATGGCCGCTGACCAATATCATCACGGTGTCCGGGTCCAAGAGATCAA 17010 |||||| | |||||||||| | | || ||||| || ||||||| || |||| Sbjct 801 GCAGGCAAAACCCATGGCCG------ATTTTCTCCACGGCGTGCGGGTCCTCGAACTCAA 748 Query 17011 TGACGGGACCCGCCCCATTCG 17031 || || ||||||||||| || Sbjct 747 CGATGGCACCCGCCCCATCCG 727 >seq7043 Length=1122 Score = 163 bits (180), Expect = 6e-36 Identities = 195/262 (74%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 21223 TTCAACCCACTCGGCCTGATGTACCGCGCCTTCGCCGGCGTCCTGGGCTACCTGGGCATC 21282 |||| ||| |||| | || || || || ||||||| || ||| |||||||||| || Sbjct 265 TTCAGCCCCATCGGGATCATCTATCGGGCATTCGCCGAAGTGCTGAACTACCTGGGCCTC 206 Query 21283 GACCTGCCGGCGCGCTTCAGCGACTTCGGCAACATGATCGTCCAGGGCCTGGTGAACGGC 21342 || || ||| | |||| ||| |||||||||||||||||| | ||||||||||| ||| Sbjct 205 GATCTCCCGACCAAGTTCACCGAGTTCGGCAACATGATCGTCAATGGCCTGGTGAATGGC 146 Query 21343 CTGCTCGCCGGCTTAGGGCAGATCAAGCGCGCCGTCCAGCGCG-TCGGCGGCGCCGCGAT 21401 || ||||||||| | || || | || | | | || |||| |||||| | | | || Sbjct 145 CTCCTCGCCGGCATGGGCAAGGTGAA-AGAGACCATCACCGCGATCGGCGACTCAACCAT 87 Query 21402 CGACTGGTTCAAGGACAAGCTCGGCATCCATTCGCCGTCGCGGGTGTTCGCCGACCTGGG 21461 | ||||||||||| ||||||| ||||| || ||||||||||| ||||| || || Sbjct 86 TGGTTGGTTCAAGGAAAAGCTCGATATCCACAGCCCATCGCGGGTGTTTGCCGAACTCGG 27 Query 21462 CGGGTTCACCATGGCCGGCCTG 21483 ||| |||||||||| || ||| Sbjct 26 CGGTTTCACCATGGAAGGGCTG 5 >seq10415 Length=2169 Score = 138 bits (152), Expect = 3e-28 Identities = 136/173 (79%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 4556 TTCGGCGCCTATGGCGACGTGCTGGCGTGCAAGGCGGAAGAGATCGACATCAACGGGCAG 4615 || |||||||||||||| |||||| | |||||||| |||||| |||||||| |||| || Sbjct 2131 TTTGGCGCCTATGGCGATGTGCTGTCCTGCAAGGCTGAAGAGGTCGACATCGACGGCAAG 2072 Query 4616 AAGAAGCTGGCCCTCTTCGCCCAACTGGAGCCCAACCAGGCGCTGCTGGAACTGAACAAG 4675 ||||| ||||| || |||||||| | ||||| | | | ||| | || || |||||| Sbjct 2071 AAGAAACTGGCGCTGTTCGCCCAGATCGAGCCGACCGCCACCCTGATCGACCTCAACAAG 2012 Query 4676 CAGCGG-CAGAAGGTCTACACCTCGGTCGAGATCGATCCCAAGTTCGCCGACA 4727 | |||| |||||| | |||||||| |||||| || |||| || || || |||| Sbjct 2011 C-GCGGCCAGAAGATTTACACCTCCGTCGAGGTCAATCCGAAATTTGCTGACA 1960 Score = 131 bits (144), Expect = 4e-26 Identities = 178/249 (71%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 5238 CACCATGCGCAACGAAACCCGCAAACAGTTCGACGCCTACCTGGCGCAGCTCGCCAAGCT 5297 ||||||||| ||||| |||||| | ||| ||||||||||| || ||||| | || Sbjct 1294 CACCATGCGTAACGATACCCGCGTCCTCTTCAACGCCTACCTGCAACAACTCGCGCAACT 1235 Query 5298 CAACGGCGTGAACTCCGCCGTCCAGACC---TTCGCCGTCGAGCCGAGTGTCCAGCAGAA 5354 ||||||||| | | |||| ||| ||| | | || || || ||| |||| Sbjct 1234 GCACGGCGTGAGC---GACGTCACCACCAAATTCACGGCCGCACCCAGCGTCGCCCAGAC 1178 Query 5355 GCTGGAGCAACGTATTCAGGAGTCCAGCGAGTTCCTGAAGCAGATCAACGTCTACGGCGT 5414 ||||| || |||||||||||||||| |||||| | |||||||| |||||||| Sbjct 1177 CCTGGAAACCCGCATTCAGGAGTCCAGCGCGTTCCTCAGCGCCATCAACGTTTACGGCGT 1118 Query 5415 CGACGAGCTGCAGGGCGAGAAGATCGGCATCGGCGTCNNNNNNACCATCGCCAGCCGTAC 5474 | ||| | | |||||||||||||||||||||| || ||||| |||||| || Sbjct 1117 CTCCGAACAGTCGGGCGAGAAGATCGGCATCGGCATCGACGGGACCATTGCCAGCACCAC 1058 Query 5475 CGATACCAC 5483 ||| ||||| Sbjct 1057 CGACACCAC 1049 Score = 82.4 bits (90), Expect = 2e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 5677 AACGGCACCAGCGCCGCGGCTACCACCAACCGCGCCGCCAACCCGCTGCTGCAGGACGTG 5736 |||||||||||| ||| || ||| |||||| | ||||||||||| ||||||||||| Sbjct 781 AACGGCACCAGCCGCGCCGCGACCTCCAACCCATCTACCAACCCGCTGTTGCAGGACGTG 722 Query 5737 AACATTGGCTGGTTCCAG 5754 |||||||||||| | ||| Sbjct 721 AACATTGGCTGGCTGCAG 704 >seq6114 Length=556 Score = 132 bits (146), Expect = 1e-26 Identities = 223/323 (69%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 12951 GACCTCGACCAGCTCGCCGCGAACTACAACGTCAAGCGCCTGGTCATCCAGCCTGGAGAT 13010 ||||| || ||| | ||||| ||| |||| | |||||||||| |||||| |||| || Sbjct 3 GACCTGGATCAGTTGGCCGCCAACGTCAACCTGCAGCGCCTGGTGATCCAGGCTGGTGAC 62 Query 13011 CCGTCGAAGGTGCCGCCCGTGCCGGAACTGCTGGAGTCCGACGACAGCCTGCGCGAGCGG 13070 ||| ||||||||| ||| || | | ||| |||||||| ||||||||||| Sbjct 63 CCGCAAGCGGTGCCGCCTGTGGCGCAGGTCAAGGAAGCCGACGACGCACTGCGCGAGCGT 122 Query 13071 GCGCAGATGGCCTGGGAAGGCCTCAGCACCGCGGGACCGCGTAACAGCTACATCTTCCAC 13130 | || |||||| |||||||| | ||| || || ||||| |||||||||||| | || Sbjct 123 GTCCAACTGGCCTACGAAGGCCTGACCACTGCCGGGCCGCGCAACAGCTACATCCTGCAT 182 Query 13131 GCCCGCGCCGCCGACGGTCGCGTCGGCGATGCCTCGGCCGTCAGCCCATCGCCTGCCGTT 13190 |||||| ||| | || || | || ||| ||||| ||||| || || ||| Sbjct 183 GCCCGCAATGCCTCGGCCCGGGTGGCGGACGCCGAGGCCGAAAGCCCGTCACCGGCCTGC 242 Query 13191 GTCGTGGTGACGGTGCAGGCCGCCCAGGGCAACGGCAGCGCCCCGGCGGACCTGCTGGCC 13250 ||| ||| ||||||| | | | || ||||| || || | || |||||||| Sbjct 243 GTCACGGTTACGGTGCTGAGCCTGGAAGGTGACGGCGCAGCTGCGCCTGAACTGCTGGCG 302 Query 13251 ATCGTCGACGCCTACCTCAACGA 13273 | |||| ||| |||||| || Sbjct 303 ACGGTCGCCGCGGCCCTCAATGA 325 >seq5286 Length=859 Score = 113 bits (124), Expect = 1e-20 Identities = 112/143 (78%), Gaps = 9/143 (6%) Strand=Plus/Minus Query 30398 GTGGCCGAGTTCTGGGAGGTCTACGACTACCTCGAAAACCTCAG---CGAAGAGCCGGTG 30454 ||||| || |||||||| |||||||| ||||||||| ||| ||| | ||||||| Sbjct 835 GTGGCTGAATTCTGGGAAGTCTACGAGTACCTCGAAGGCCTGGATGCCGACGGGCCGGTG 776 Query 30455 CTCAACCACAGCAAGAACCCCGGAACC---ATCGCCATCAACCTCAACGAGTTCGTGAAG 30511 |||| ||||||||||| | || | |||||||||||||||||||| ||||||||| Sbjct 775 GTCAATCACAGCAAGAAT---GAAAACGTGATCGCCATCAACCTCAACGACTTCGTGAAG 719 Query 30512 CTGGCCGCCGACCACCGCCAGAA 30534 | || ||||| |||||||| || Sbjct 718 GTCGCGGCCGAGCACCGCCAAAA 696 >seq11087 Length=724 Score = 86.0 bits (94), Expect = 1e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 33234 AATGCGGTTCCGCCGGCTGCGGCCGAGGCCATCGCCGGCGTGATGGGCACCACCCTGTTG 33293 || || || || || || |||||||| || |||||| || ||||||||||| || | Sbjct 432 AACGCAGTCCCACCAGCAGCGGCCGAAGCGATCGCCCAGGTCATGGGCACCACGCTCCTC 491 Query 33294 TTGGCTGAGGCTGGCGAGACCTTCCTGCTCAGTAGCACGCCGATCTGGGT 33343 |||| ||||| |||||||| ||| |||||| |||| |||| ||||||| Sbjct 492 CTGGCCGAGGCCGGCGAGACGTTCATGCTCAACAGCATGCCGGTCTGGGT 541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113715151305808