Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq9889 87.8 6e-13 seq8086 84.2 7e-12 >seq9889 Length=1737 Score = 87.8 bits (96), Expect = 6e-13 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 1504 TTCAAGACGAAGCACTTGAACGTCTGGACGTCGGCCAAGGCGGGCTATTTCAACCTCGAA 1563 || || || |||||| |||| ||||| || ||| | || || ||||| | | Sbjct 20 TTTAAAACCAAGCACCTGAATATCTGGGTCTCCGCCCGAGAGGCGTACTTCAATATGGTG 79 Query 1564 GACTGGAAATCATGCGAAGACCGATCGCTGACCCTTGAGCAGTTCGAGGGGCAAGATTGC 1623 ||||||| ||||||||| |||||||| || || ||||||||||| ||| || Sbjct 80 AGCTGGAAACAGTGCGAAGACACGTCGCTGACACTGGAACAGTTCGAGGGACAACCCTGT 139 Query 1624 GTGCTCGCGCTCGACATGGCGCGCAAGCTCGATTTGAACAGTATGGCCCGGCTTTT 1679 || ||| | ||| |||| || ||||| || ||||||| |||||||||||||| Sbjct 140 TATCTGGCGTTTGACCTGGCCCGTAAGCTGGACATGAACAGCATGGCCCGGCTTTT 195 >seq8086 Length=1658 Score = 84.2 bits (92), Expect = 7e-12 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 45253 ACCAAATCCGCTGTACCGGCAAGGCATGTCGCGCGTTGGCTGCATGCCATGCATCAAC-G 45311 |||||| || || || ||||| ||| ||||| || |||||||| ||||||||| | Sbjct 246 ACCAAACCCACTCTATTCACAAGGAATGGGCCGCGTCGGGTGCATGCCCTGCATCAACTG 187 Query 45312 CCGGGAAGTTGGAACTGCGAGAGATCGCGCGCCGGTTTCCCGAGCACGTCGAGCGCATTG 45371 ||| ||| | |||||||||||||||||| |||||| ||||| || || ||||||| Sbjct 186 CCGCAAAGACG-AACTGCGAGAGATCGCGCTCCGGTTCCCCGAAGTGGTTGACCGCATTG 128 Query 45372 CGGAATGGGAGCG 45384 |||||||| Sbjct 127 ACCGCTGGGAGCG 115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170643115044040