Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6327 163 4e-35 seq2468 158 2e-33 seq2527 145 1e-29 >seq6327 Length=14581 Score = 163 bits (180), Expect = 4e-35 Identities = 520/806 (65%), Gaps = 47/806 (6%) Strand=Plus/Minus Query 62370 AGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 62429 || ||||| |||||||| | |||||| | || ||||| || | ||| |||| || || Sbjct 7589 AGCAGATGGGGGTTAACAATTTGGAAGTTACCGGACAAAACGCGTCGACTGTAGATGTTG 7530 Query 62430 CTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 62489 || || || || | ||| ||||| ||||| | |||||||| || || || || ||| Sbjct 7529 GACGTGTAGGGCTCAATCGATTCATTGTTTCCAAGGATTTGAGCTGTGGAGGCCGTTGGC 7470 Query 62490 ATAGGTGCCACCAATAAACTATTTCTAAGACCGTATG-TTCT-GATTTTATCTTTTAGAT 62547 || || || | | | ||| || | | || ||| ||| |||||| || || ||| Sbjct 7469 ATTGGGGCGAGAAGAAGACTGTTACGCACTCC--ATGCTTCGCGATTTTCTCCTTCAGAG 7412 Query 62548 GTTCCCAATTCCAAAGATCCGACGGTACAAC------------------ANNNNNNNNNN 62589 | ||||||| || |||| | || | ||| | Sbjct 7411 CTACCCAATTGCACTGATCTGTAGGAAGAACTGGCTTTCCATCTTCTGTATTCCACATTT 7352 Query 62590 NATATTGTAGAATACCGTTACTGGCGTAC----GATCCTACATATGTATCATATGGTCCT 62645 |||||| ||||| || | ||| ||| || ||| | || || ||||| | || Sbjct 7351 CATATTGAAGAATTCCTT----GGCTTACAGGAGACCCTTCGTACGTCTCATAAGTACCA 7296 Query 62646 TCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATC 62705 | |||||||||| || | | ||||| | ||||| | ||||||||||||||||| Sbjct 7295 TATTTCTCAGCTAATTCAGAGGATGCCTCAAGAGCACCATGGTAAATGGTTTCAAAGATT 7236 Query 62706 TTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCG 62765 |||| || ||||| | |||| || ||| || ||||| | | || || || Sbjct 7235 CTCTTGTTGAGATCACGAGCTTGAGGACTAGTGAACGGATACCGCATCAACATGAAAGCA 7176 Query 62766 TCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCT 62825 || ||||| |||||||| || || || || || | ||| | ||| || || |||||||| Sbjct 7175 TCTGCTAAACCTTGAACTCCGATTCCAATTGGGCGATGACGCTTGTTTGATGTTTCAGCT 7116 Query 62826 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT---TCTGACAATTACT 62882 || |||| ||||| |||| || |||||||| || || || | ||||| || Sbjct 7115 TCGGGAACCGGATAGAAATTGCAGTCGATAATTTTGTTAAGGTTACGTGTGACA---ACC 7059 Query 62883 TTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTATTACAAACATGTTC 62939 ||| | | | || || ||||||| | | ||| | || || |||| Sbjct 7058 TTGGTAATTGCATGAAGCTTTTCGTAATCAAAAGTTTTGTCTTCTTTGACGAATCGGTTC 6999 Query 62940 AATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATC 62999 | |||| || || | ||| || || || || |||| || | || || || | || Sbjct 6998 AGAGCAATCGAAGCTAAATTGCAAACAGCGACTTCATCAGGAGACGAGTACTGCACGATT 6939 Query 63000 TCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 63059 || || || ||||| |||||| |||||||| | ||||| ||||| |||| | || Sbjct 6938 TCCGTACAGAGATTGGAACACTTAATAGTTCCAAGATTTTTCTGATTCGACTTTCTATTG 6879 Query 63060 CACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 63119 || ||||| || ||||| ||| | || ||||||||||||| || | || ||| || | Sbjct 6878 CAAGCATCTTTGTAAAGCATGTACGGTATACCAGTTTCAATTTGCG---CTGTAA-CGAT 6823 Query 63120 TT----CCAGACGACTCGAGCCTTTA 63141 || ||||| | | ||||| |||| Sbjct 6822 TTCCTCCCAGAGGGCACGAGCTTTTA 6797 Score = 131 bits (144), Expect = 2e-25 Identities = 332/492 (67%), Gaps = 20/492 (4%) Strand=Plus/Minus Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 ||||| || |||||||| | ||| | || || ||||| || |||| | ||| ||||| Sbjct 5941 TTGTTACCGCCCTGATCGACGTAACGTGCAGTATTATTGTACACTCGGAGCATAGGAATC 5882 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGAT-ATAGCCTCCACTGGCACGAAT--ATTA 63533 | ||| || ||| |||||||||| || | || || | |||| || ||||| | | Sbjct 5881 AAACCATTCGATGTACCATTGGTTCCAGCAATCATTGT-TCCAGATGCGCGAATGCAATG 5823 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593 ||| ||| || || || ||||| || || || | || || | || | | Sbjct 5822 TGCATT--TAGGCCAATACCACCTGCTGACTTTGAAATGAGGGCACACTGCC--AAAGAG 5767 Query 63594 TCAT--AGATGCCTTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGA---C 63647 || | |||| || || || ||| || ||| || ||| ||||| || ||| | Sbjct 5766 TCTTGAAGATCCCATCAATTGAATCGTCATGCATCGTCAAG-AGAAAGCA---AGAGCTC 5711 Query 63648 ATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 63707 ||||| | | |||||| ||||| || | || |||||||| || || ||||| Sbjct 5710 ATTTGTGGTTTACAAGTTCCTGCATTGAAAAGTGTGGGAGAAGCATGAGTGAACCAGCGA 5651 Query 63708 TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTAC 63766 || || | | |||||| || || ||||| | || ||||| | ||| |||||||| || Sbjct 5650 TCGGACATCAAATTGTAGGTTTCGATAGCGGCCTCGATATCTTCCTTG-TGAATTCCAAC 5592 Query 63767 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAA 63826 ||||||||||| | || || ||||| | ||||||| | |||||| ||||| Sbjct 5591 GGCGACACGCATAAGCAAATGTTGAGGACGCTCAACAACCCGTCCATCTATTTTTAACAA 5532 Query 63827 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 63886 || || ||||||||||| ||||| |||||| ||||||| || ||||| || || | Sbjct 5531 ATATGACCGCTCCAAAGTTTTGAAACCGAAATAGGTGTATGAGAAATCTCGGTCATACAC 5472 Query 63887 AATAACCGAATT 63898 |||| ||||| Sbjct 5471 AATAGAAGAATT 5460 Score = 114 bits (126), Expect = 2e-20 Identities = 324/489 (66%), Gaps = 14/489 (3%) Strand=Plus/Minus Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 ||||| || || ||||| | ||| | ||| || ||||| || |||| | ||| || || Sbjct 4561 TTGTTACCGCCTTGATCGACGTAACGAGCAGTATTATTGTACACTCGGAGCATAGGGATT 4502 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGAT-ATAGCCTCCACTGGCACGAAT--ATTA 63533 | ||| || ||| | |||||||| || | ||| || | |||| || ||||| | | Sbjct 4501 AAACCATTCGATGTTCCATTGGTTCCAGCGATCATTGT-TCCAGATGCGCGAATGCAATG 4443 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593 | ||| |||||| || || ||||| || || || | || || | | || Sbjct 4442 CGCATT--TAGACCAATACCACCTGCTGACTTCGAAATAAGGGCACACTGCCAGAGAGTT 4385 Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGA---CATT 63650 | || || || || || ||| || ||| | || || || || ||| |||| Sbjct 4384 TTGTAAATCCCATCAATTGAATCGTCATGCATCGTCAGGAGGAAGCA---AGAGCTCATT 4328 Query 63651 TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710 || | |||||| ||||| || | ||||||||||| || || ||||| || Sbjct 4327 TGTGGTTTGCAAGTTCCTGCATTGAAAAGTGTAGGAGAAGCATGAGTGAACCAGCGCTCG 4268 Query 63711 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGC 63769 || | | |||||| || || ||||| | || ||||| | ||| |||||||| || || Sbjct 4267 GACATCAAATTGTAGGTTTCGATAGCGGCATCGATATCTTCCTTG-TGAATTCCAACAGC 4209 Query 63770 GACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTA 63829 ||||||||| | || || ||||| | || |||| | | ||||| ||||| || Sbjct 4208 GACACGCATAAGCAAATGTTGAGGACGCTCGACAACCTGTCCATCCATTTTTAACAAATA 4149 Query 63830 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 || ||||||||||| ||||| ||||| ||||||| || || || || || | ||| Sbjct 4148 TGACCGCTCCAAAGTTTTGAAACCGAAATATGTGTATGAGAAATCCCGGTCATACACAAT 4089 Query 63890 AACCGAATT 63898 | ||||| Sbjct 4088 AGAAGAATT 4080 Score = 93.3 bits (102), Expect = 5e-14 Identities = 243/370 (66%), Gaps = 3/370 (1%) Strand=Plus/Minus Query 62775 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62834 |||||||| || || || || || | ||| | ||| || || |||||||||| |||| Sbjct 6677 CCTTGAACTCCGATTCCAATTGGGCGATGACGCTTGTTTGATCTTTCAGCTTCGGGAACC 6618 Query 62835 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62894 ||||| ||||| || ||||| || || || || | || || ||| | | Sbjct 6617 GGATAGTAATTGCAGTCAATAATCTTGTTAAGGTTACGTGTGATAACCTTGGTAATCGCA 6558 Query 62895 TTCAGTTTGAGAAAATCAAA---TCGCCCATCTATTACAAACATGTTCAATGCAACAGAT 62951 | || || ||||||| | | ||| | || | ||||| |||| || Sbjct 6557 TGAAGCTTTTCGTAATCAAAGGTTTTGTCTTCTTTGACGCATCGGTTCAGAGCAATCGAA 6498 Query 62952 GCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 63011 || | ||| || || || || |||| || | || || || | || |||||||| ||| Sbjct 6497 GCTAAATTGCAAACAGCGACTTCATCAGGAGACGAGTACTGCACGATTTCAGTGCAGAGA 6438 Query 63012 TTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 63071 || ||| || |||||||| | ||||| || || |||| | || || ||||| || Sbjct 6437 TTGGAACATTTAATAGTTCCAAGATTTTTCTGGTTCGACTTTCTATTGCAAGCATCTTTG 6378 Query 63072 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 63131 || || ||| | || |||||||||||||| || ||| | || | | ||| | | | Sbjct 6377 TAGAGCATGTAAGGTGTACCAGTTTCAATTTGCGATGTAACGATTTCCTCCCAAAGGGCA 6318 Query 63132 CGAGCCTTTA 63141 |||||||||| Sbjct 6317 CGAGCCTTTA 6308 >seq2468 Length=4028 Score = 158 bits (174), Expect = 2e-33 Identities = 306/448 (68%), Gaps = 13/448 (3%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||||||||||||||||||| | || || || || |||| ||||| ||| || Sbjct 3101 ACATCAAACATGCGAAATCTCGATGGAGTCCTTCATCTCGTGAAATTAGTTCATTGCT-- 3158 Query 33634 ACGTGAGTC----CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 ||||||| | ||||| || |||||||| || | |||||| |||| ||| || ||| Sbjct 3159 --GTGAGTCAACCCAGGCATGAGTCCACGCTTCTTCAACCAAAAAATGGCAGCAAACGAT 3216 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33749 ||||| || ||||||||||| || |||||||| || || | | |||| | || Sbjct 3217 CCGGAGAAAAAGATTCCTTCCACGGCAGCAAAAGCGATCACGCGAATTCCAAACGAAGCA 3276 Query 33750 CTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33806 | | || | ||||| ||||||| ||||| ||||| || | || || | | | Sbjct 3277 TTCTTATCTCCAATCCATCGGAGAGCCCAGTCGGCTTTCTTCTTAATGCAGGGAAACTCT 3336 Query 33807 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 33866 | || ||||||||||| ||| | ||| | ||| |||| || | ||||||| Sbjct 3337 TGAATAGCATTAAAGAGCGTGTTCCTCTCAGTTAGATCGGTAACGTATGCTTCGATCATC 3396 Query 33867 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 33926 |||||| || |||||||| ||| | ||| ||||| || | |||||| | Sbjct 3397 TTTGAATACATCTCGGAATGAATTCCTTCGACGGCAATCTGGAAACTGTAGAACGAGAGC 3456 Query 33927 GCCTCGGTAATCTGCACTT-CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCC 33985 || || | |||| ||||| |||| |||||| || | | |||||| || || ||||| Sbjct 3457 GCTTCAGGCATCTTCACTTCCTGT-GTAAATCGCTCAACGAGATTTTCGTTTACGATTCC 3515 Query 33986 ATCACTGGCTGCAAAAAACGCCAATACA 34013 ||| || |||||||||||||| ||| Sbjct 3516 ATCTGAAGCAGCAAAAAACGCCAAAACA 3543 >seq2527 Length=10055 Score = 145 bits (160), Expect = 1e-29 Identities = 401/604 (66%), Gaps = 23/604 (4%) Strand=Plus/Minus Query 33416 ATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAAC 33475 ||| || || |||| |||||| ||| | | ||||||||| || || | | || Sbjct 5732 ATCAGCAACATATTCAATATATTGCGACATGAGTCGACAATTCATACCAATCATATCCAC 5673 Query 33476 TGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATCT 33535 ||||||||| | || ||| | || ||||| || || || | |||||| || Sbjct 5672 TGGAAGAGCTTCGGTTAGATACTCCTGTTCGATTTGAACAGCTTCACGTATAATT--TCA 5615 Query 33536 AACGGTT--TCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAATCG 33593 || || ||||| | ||| ||| | || || ||| |||||| || ||||| Sbjct 5614 CACACTTGCTCTTCTGTTGGTTTTTGTTCGAGATACTTGTACACCAAACACGCAAAATCT 5555 Query 33594 CAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGG 33653 | || || || || ||||| |||||| |||||| || | || ||||| || Sbjct 5554 CGATGGAGTCCTTCATCTCTTGAAATTAACTCGTTACTGTGTGTCAAACCCGGCATAAGT 5495 Query 33654 CCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACT 33713 ||||| || || |||||||| || | ||| || || || || || ||||||||||| ||| Sbjct 5494 CCACGTTTCTTCAGCCAAAAAATTGCAGCAAACGAGCCAGAGAAAAAGATTCCTTCCACT 5435 Query 33714 GCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGA 33770 |||||||| |||| || | | ||| | || | | || | ||||| |||| Sbjct 5434 GCAGCAAATGCAACAACACGCATCCCAAATGAAGCATTCTTATTTTCAATCCA---TTGA 5378 Query 33771 ---GCCCAATCGGCCTTCTTTTTTACACAAGGCA--TCGTTTCTATGGCATTAAAGAGAT 33825 | |||||| || |||||||||| | | || | ||| | || || || ||||| Sbjct 5377 ATTGTCCAATCTGCTTTCTTTTTTATATACGGAAAGTCG--TGAATTGCGTTGAAGAGTG 5320 Query 33826 AGtttttttCATTACT--ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 33883 |||| ||| ||| ||| |||| || || |||||||| ||||||||| || Sbjct 5319 TATTTTGTTC--GACTGGATCGTTAATGTACGTTTCGATCAATTTCGAATACATTTCAGA 5262 Query 33884 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCAC 33943 ||||| ||| | || |||||||| ||||||| | ||||| | |||| ||| Sbjct 5261 GTGAATTCCTTCCACTGCAATCTGAAAATTGTAGAAAGAGAGTGCCTCAGGCATCTTCAC 5202 Query 33944 TTC-TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAA 34002 ||| ||| |||| ||| | | ||||||||| || |||||||| |||||||||| Sbjct 5201 TTCTTGTGTAAAA-CGTCCAATGAGATTTTCATTTACGATTCCATCTGAAGCTGCAAAAA 5143 Query 34003 ACGC 34006 | || Sbjct 5142 ATGC 5139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629705397994560