Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2527 136 4e-27 >seq2527 Length=10055 Score = 136 bits (150), Expect = 4e-27 Identities = 409/623 (66%), Gaps = 15/623 (2%) Strand=Plus/Minus Query 11450 TCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATA 11509 || |||||||| ||| || || |||| ||||| || ||||| | | |||||||||| Sbjct 5746 TCAGTTAATAAGTGATCAGCAACATATTCAATATATTGCGACATGAGTCGACAATTCATA 5687 Query 11510 CCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCA 11569 || || | |||||| |||| ||| | || | | |||||| ||| || | ||| || ||| Sbjct 5686 CCAATCATATCCACTGGAAGAGCTTCGGTTAGATACTCCTGTTCGATTTGAACAGCTTCA 5627 Query 11570 ---ATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATT 11626 || ||| || | |||| | |||| ||| | || || ||| Sbjct 5626 CGTATAATTTCACACACTTGCTCTTCTGT---TGGTTTTTGTTCGAGATACTTGTACACC 5570 Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 |||||||||||||| | ||| | ||||| ||||| |||| || ||| ||| Sbjct 5569 AAACACGCAAAATCTCGATGGAGTCCTTCATCTCTTGAAATTAACTCGTTACTGTGTGTC 5510 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 || || ||||| | ||| ||||| || | |||||| || |||||||| || ||||| || Sbjct 5509 AAACCCGGCATAAGTCCACGTTTCTTCAGCCAAAAAATTGCAGCAAACGAGCCAGAGAAA 5450 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT---ACCTTGTTGCTA 11803 || ||||| ||||| || |||||||| || || | ||| || | || || | Sbjct 5449 AAGATTCCTTCCACTGCAGCAAATGCAACAACACGCATCCCAAATGAAGCATTCTTATTT 5390 Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTC-CATTGT-TTCTATAG 11861 ||||||| | | |||||| ||||||||||||| || | | || | || | Sbjct 5389 TCAATCCATTGAATTGTCCAATCTGCTTTCTTTTTTA--TATACGGAAAGTCGTGAATTG 5332 Query 11862 CGTTAAATAAATGCATTTT-TTCTATATTATCTCTTACATATGTATCTATTAATAAACTA 11920 |||| || | || ||||| ||| | ||| | | || || || || ||| | Sbjct 5331 CGTTGAA-GAGTGTATTTTGTTCGACTGGATCGTTAATGTACGTTTCGATCAATTTCGAA 5273 Query 11921 TACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCT 11980 |||||||| || ||||| ||||| || || ||||| |||||| | ||||||| Sbjct 5272 TACATTTCAGAGTGAATTCCTTCCACTGCAATCTGAAAATTGTAGAAAGAGAGTGCCTCA 5213 Query 11981 GAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTA 12040 | || || || ||| | | | | ||| |||||||| || ||||| | Sbjct 5212 GGCATCTTCACTTCTTGTGTAAAACGTCCAATGAGATTTTCATTTACGATTCCATCTGAA 5153 Query 12041 GATGCAAAAAATGCTAGTATATG 12063 | |||||||||||| || || || Sbjct 5152 GCTGCAAAAAATGCAAGAATGTG 5130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468441332306880