Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6327 149 8e-31 seq2468 136 5e-27 seq2527 122 1e-22 >seq6327 Length=14581 Score = 149 bits (164), Expect = 8e-31 Identities = 329/482 (68%), Gaps = 16/482 (3%) Strand=Plus/Minus Query 66210 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 66269 ||||| || |||||||| | ||| | || || ||||| || |||| | ||| ||||| Sbjct 5941 TTGTTACCGCCCTGATCGACGTAACGTGCAGTATTATTGTACACTCGGAGCATAGGAATC 5882 Query 66270 ATACCATTGGATGTACCATTGGTCCCGGAGAT-ATAGCTTCCACTTGCACGAAT--ATTA 66326 | |||||| |||||||||||||| || | || || | ||||| ||| ||||| | | Sbjct 5881 AAACCATTCGATGTACCATTGGTTCCAGCAATCATTG-TTCCAGATGCGCGAATGCAATG 5823 Query 66327 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 66386 ||| ||| || || || ||||| || || || | || || | | || Sbjct 5822 TGCATT--TAGGCCAATACCACCTGCTGACTTTGAAATGAGGGCACACTGCCAAAGAGTC 5765 Query 66387 TCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGA---CAT 66442 | |||| || || || ||| || ||| || ||| ||||| || ||| ||| Sbjct 5764 TTGAAGATCCCATCAATTGAATCGTCATGCATCGTCAAG-AGAAAGCA---AGAGCTCAT 5709 Query 66443 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 66502 ||| | || |||||| ||||| || | || |||||||| || || ||||| || Sbjct 5708 TTGTGGTTTACAAGTTCCTGCATTGAAAAGTGTGGGAGAAGCATGAGTGAACCAGCGATC 5649 Query 66503 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTG 66561 || | | |||||| || || ||||| | || ||||| | ||| |||||||| || | Sbjct 5648 GGACATCAAATTGTAGGTTTCGATAGCGGCCTCGATATCTTCCTTG-TGAATTCCAACGG 5590 Query 66562 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGT 66621 |||||||||| | || || ||||| | ||||| | | | |||||| ||||| | Sbjct 5589 CGACACGCATAAGCAAATGTTGAGGACGCTCAACAACCCGTCCATCTATTTTTAACAAAT 5530 Query 66622 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 66681 | || ||||||||||| ||||| |||||| ||||||| || ||||| || || | || Sbjct 5529 ATGACCGCTCCAAAGTTTTGAAACCGAAATAGGTGTATGAGAAATCTCGGTCATACACAA 5470 Query 66682 TA 66683 || Sbjct 5469 TA 5468 Score = 147 bits (162), Expect = 3e-30 Identities = 337/503 (67%), Gaps = 17/503 (3%) Strand=Plus/Minus Query 65442 TTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTC 65501 |||||||||| |||| | ||||| | ||||| | ||||||||||| ||||| || Sbjct 7292 TTCTCAGCTAATTCAGAGGATGCCTCAAGAGCACCATGGTAAATGGTTTCAAAGATTCTC 7233 Query 65502 TTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCT 65561 || || ||||| | |||| | ||| || ||||| | | || || || ||| Sbjct 7232 TTGTTGAGATCACGAGCTTGAGGACTAGTGAACGGATACCGCATCAACATGAAAGCATCT 7173 Query 65562 GCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCT 65621 ||||| |||||||| || || || || || | ||| | ||| || || |||||||||| Sbjct 7172 GCTAAACCTTGAACTCCGATTCCAATTGGGCGATGACGCTTGTTTGATGTTTCAGCTTCG 7113 Query 65622 GGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT---TCTGACAATTACTTTG 65678 |||| ||||| |||| || |||||||| || || || | ||||| || ||| Sbjct 7112 GGAACCGGATAGAAATTGCAGTCGATAATTTTGTTAAGGTTACGTGTGACA---ACCTTG 7056 Query 65679 ACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCTCATCTATTACAAACATGTTCAAT 65735 | | | || || ||||||| | || ||| | || || ||||| Sbjct 7055 GTAATTGCATGAAGCTTTTCGTAATCAAAAGTTTTGTCTTCTTTGACGAATCGGTTCAGA 6996 Query 65736 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 65795 |||| || || | ||| ||||| || || |||| || | || || || | || || Sbjct 6995 GCAATCGAAGCTAAATTGCAAACAGCGACTTCATCAGGAGACGAGTACTGCACGATTTCC 6936 Query 65796 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 65855 || || ||||| |||||| || ||||| | ||||| ||||| |||| | || || Sbjct 6935 GTACAGAGATTGGAACACTTAATAGTTCCAAGATTTTTCTGATTCGACTTTCTATTGCAA 6876 Query 65856 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT- 65914 ||||| || ||||| ||| | || ||||||||||||| || | || ||| || ||| Sbjct 6875 GCATCTTTGTAAAGCATGTACGGTATACCAGTTTCAATTTGCG---CTGTAA-CGATTTC 6820 Query 65915 ---CCAGACGACTCGAGCCTTTA 65934 ||||| | | ||||| |||| Sbjct 6819 CTCCCAGAGGGCACGAGCTTTTA 6797 Score = 136 bits (150), Expect = 5e-27 Identities = 324/481 (67%), Gaps = 14/481 (3%) Strand=Plus/Minus Query 66210 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 66269 ||||| || || ||||| | ||| | ||| || ||||| || |||| | ||| || || Sbjct 4561 TTGTTACCGCCTTGATCGACGTAACGAGCAGTATTATTGTACACTCGGAGCATAGGGATT 4502 Query 66270 ATACCATTGGATGTACCATTGGTCCCGGAGAT-ATAGCTTCCACTTGCACGAAT--ATTA 66326 | |||||| ||||| |||||||| || | ||| || | ||||| ||| ||||| | | Sbjct 4501 AAACCATTCGATGTTCCATTGGTTCCAGCGATCATTG-TTCCAGATGCGCGAATGCAATG 4443 Query 66327 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 66386 | ||| |||||| || || ||||| || || || | || || | | || Sbjct 4442 CGCATT--TAGACCAATACCACCTGCTGACTTCGAAATAAGGGCACACTGCCAGAGAGTT 4385 Query 66387 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA---CATT 66443 | || || || || || ||| || ||| | || || || || ||| |||| Sbjct 4384 TTGTAAATCCCATCAATTGAATCGTCATGCATCGTCAGGAGGAAGCA---AGAGCTCATT 4328 Query 66444 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 66503 || | | |||||| ||||| || | ||||||||||| || || ||||| || Sbjct 4327 TGTGGTTTGCAAGTTCCTGCATTGAAAAGTGTAGGAGAAGCATGAGTGAACCAGCGCTCG 4268 Query 66504 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGC 66562 || | | |||||| || || ||||| | || ||||| | ||| |||||||| || || Sbjct 4267 GACATCAAATTGTAGGTTTCGATAGCGGCATCGATATCTTCCTTG-TGAATTCCAACAGC 4209 Query 66563 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 66622 ||||||||| | || || ||||| | || || | || | ||||| ||||| || Sbjct 4208 GACACGCATAAGCAAATGTTGAGGACGCTCGACAACCTGTCCATCCATTTTTAACAAATA 4149 Query 66623 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 || ||||||||||| ||||| ||||| ||||||| || || || || || | ||| Sbjct 4148 TGACCGCTCCAAAGTTTTGAAACCGAAATATGTGTATGAGAAATCCCGGTCATACACAAT 4089 Query 66683 A 66683 | Sbjct 4088 A 4088 Score = 98.7 bits (108), Expect = 1e-15 Identities = 244/370 (66%), Gaps = 3/370 (1%) Strand=Plus/Minus Query 65568 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 65627 |||||||| || || || || || | ||| | ||| || || |||||||||| |||| Sbjct 6677 CCTTGAACTCCGATTCCAATTGGGCGATGACGCTTGTTTGATCTTTCAGCTTCGGGAACC 6618 Query 65628 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 65687 ||||| ||||| || ||||| || || || || | || || ||| | | Sbjct 6617 GGATAGTAATTGCAGTCAATAATCTTGTTAAGGTTACGTGTGATAACCTTGGTAATCGCA 6558 Query 65688 TTCAGTTTGAGAAAATCAAA---TCGCTCATCTATTACAAACATGTTCAATGCAACAGAT 65744 | || || ||||||| | || ||| | || | ||||| |||| || Sbjct 6557 TGAAGCTTTTCGTAATCAAAGGTTTTGTCTTCTTTGACGCATCGGTTCAGAGCAATCGAA 6498 Query 65745 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 65804 || | ||| ||||| || || |||| || | || || || | || |||||||| ||| Sbjct 6497 GCTAAATTGCAAACAGCGACTTCATCAGGAGACGAGTACTGCACGATTTCAGTGCAGAGA 6438 Query 65805 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 65864 || ||| || || ||||| | ||||| || || |||| | || || ||||| || Sbjct 6437 TTGGAACATTTAATAGTTCCAAGATTTTTCTGGTTCGACTTTCTATTGCAAGCATCTTTG 6378 Query 65865 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 65924 || || ||| | || |||||||||||||| || ||| | || | | ||| | | | Sbjct 6377 TAGAGCATGTAAGGTGTACCAGTTTCAATTTGCGATGTAACGATTTCCTCCCAAAGGGCA 6318 Query 65925 CGAGCCTTTA 65934 |||||||||| Sbjct 6317 CGAGCCTTTA 6308 >seq2468 Length=4028 Score = 136 bits (150), Expect = 5e-27 Identities = 304/451 (67%), Gaps = 19/451 (4%) Strand=Plus/Plus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||||||||||||||||||| | || || || || |||| ||||| ||| ||| Sbjct 3101 ACATCAAACATGCGAAATCTCGATGGAGTCCTTCATCTCGTGAAATTAGTTCATTG---- 3156 Query 36210 ACGTGAGT----CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT 36265 |||||| || ||||| || |||||||| || | |||||| |||| ||||| ||| Sbjct 3157 CTGTGAGTCAACCCAGGCATGAGTCCACGCTTCTTCAACCAAAAAATGGCAGCAAACGAT 3216 Query 36266 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA 36325 || || || || |||||||| || || ||||| || || | | |||| | ||| Sbjct 3217 CCGGAGAAAAAGATTCCTTCCACGGCAGCAAAAGCGATCACGCGAATTCCAAACGAAGCA 3276 Query 36326 CTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 36382 | | || | ||||| ||||||| ||||| ||||| || | || || | | Sbjct 3277 TTCTTATCTCCAATCCATCGGAGAGCCCAGTCGGCTTTCTTCTTAATGCAGGGAA---AC 3333 Query 36383 TCT---ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 36439 ||| |||||||||||||| ||| | ||| | ||| |||| |||| || ||| Sbjct 3334 TCTTGAATAGCATTAAAGAGCGTGTTCCTCTCAGTTAGATCGGTAACGTATGCTTCGATC 3393 Query 36440 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 36499 | |||||| || |||||||| ||| | ||| || || || | |||||| | Sbjct 3394 ATCTTTGAATACATCTCGGAATGAATTCCTTCGACGGCAATCTGGAAACTGTAGAACGAG 3453 Query 36500 CTAGCCTCGGTAATCTGTACTT-CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 36558 || || | |||| |||| |||| |||||| || | | |||||| || || || Sbjct 3454 AGCGCTTCAGGCATCTTCACTTCCTGT-GTAAATCGCTCAACGAGATTTTCGTTTACGAT 3512 Query 36559 TCCGTCACTGGCTGCAAAAAACGCCAATACA 36589 ||| || || |||||||||||||| ||| Sbjct 3513 TCCATCTGAAGCAGCAAAAAACGCCAAAACA 3543 >seq2527 Length=10055 Score = 122 bits (134), Expect = 1e-22 Identities = 396/605 (65%), Gaps = 25/605 (4%) Strand=Plus/Minus Query 35992 ATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 36051 ||| || ||| |||| |||||| ||| | | ||||||||| || || | | || Sbjct 5732 ATCAGCAACATATTCAATATATTGCGACATGAGTCGACAATTCATACCAATCATATCCAC 5673 Query 36052 TGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATAT 36111 ||||||||| | || ||| | || ||||| || || || || |||||| Sbjct 5672 TGGAAGAGCTTCGGTTAGATACTCCTGTTCGATTTGAACAGCTTCACGTATAATTTCACA 5613 Query 36112 TACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCA 36171 ||| ||||| | ||| | | || || ||| |||||| || ||||| | Sbjct 5612 CACTTGCTCTTCTGTTGGTTTTTGTTCGAGATACTTGTACACCAAACACGCAAAATCTCG 5553 Query 36172 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTC----CGGGCATTA 36227 || || || || ||||| |||||| ||||| | ||| ||| | ||||| | Sbjct 5552 ATGGAGTCCTTCATCTCTTGAAATTAACTCGTT----ACTGTGTGTCAAACCCGGCATAA 5497 Query 36228 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTA 36287 | ||||| || || |||||||| || | ||||| || ||||| || || |||||||| | Sbjct 5496 GTCCACGTTTCTTCAGCCAAAAAATTGCAGCAAACGAGCCAGAGAAAAAGATTCCTTCCA 5437 Query 36288 CTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT---ATCCACTTTT 36344 |||| ||||| |||| || | | ||| | ||| | | || | ||||| || Sbjct 5436 CTGCAGCAAATGCAACAACACGCATCCCAAATGAAGCATTCTTATTTTCAATCCA---TT 5380 Query 36345 GA---GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC-TCTATAGCATTAAAGAGA 36400 || | |||||| || |||||||||| | | || | ||| | || || || ||||| Sbjct 5379 GAATTGTCCAATCTGCTTTCTTTTTTATATACGGAAA-GTCGTGAATTGCGTTGAAGAGT 5321 Query 36401 TAGtttttttCATTACT--ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 36458 |||| ||| ||| ||| |||| || || || ||||| ||||||||| | Sbjct 5320 GTATTTTGTTCG--ACTGGATCGTTAATGTACGTTTCGATCAATTTCGAATACATTTCAG 5263 Query 36459 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 36518 | ||||| ||| | || || ||||| ||||||| | ||||| | |||| | Sbjct 5262 AGTGAATTCCTTCCACTGCAATCTGAAAATTGTAGAAAGAGAGTGCCTCAGGCATCTTCA 5203 Query 36519 CTTCT-GTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 36577 ||||| || |||| ||| | | ||||||||| || ||||| || ||||||||| Sbjct 5202 CTTCTTGTGTAAAA-CGTCCAATGAGATTTTCATTTACGATTCCATCTGAAGCTGCAAAA 5144 Query 36578 AACGC 36582 || || Sbjct 5143 AATGC 5139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658055546515680