Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq9889 242 9e-60 seq12872 132 1e-26 >seq9889 Length=1737 Score = 242 bits (268), Expect = 9e-60 Identities = 244/317 (77%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 2745 ACAACGTCACATCCTTGGCTGGGGGAATGGGTATACCTGGGTGAAACGTAATCGTCGCGG 2804 ||| || || ||||| |||||||| ||||| ||| | |||||||||||||| || ||||| Sbjct 1421 ACAGCGCCATATCCTCGGCTGGGGCAATGGTTATTCGTGGGTGAAACGTAACCGGCGCGG 1480 Query 2805 TGAAGTCATATCCCTGGATTGCTGTATGCCGTGGGAAACGACGCTGATGAATACTGGTGG 2864 ||||||| |||| || |||||||||||||||||| || ||| |||| || || || Sbjct 1481 GGAAGTCACGGCCCTTGACGCCTGTATGCCGTGGGAAACCACCCTGTTGAACACGGGCGG 1540 Query 2865 CCGATATACCTACGGTTTGTACAACGAATATGGGGCGTTTGCGATCAGTCCGGACGATAT 2924 || ||||||||||| |||| |||||| | || ||||| ||||| || ||||| || Sbjct 1541 GCGCTATACCTACGGGGTGTATAACGAAGACGGCAGTTTTGCCATCAGCCCCGACGACAT 1600 Query 2925 GATCCACATCCGTGCGCTGGGTAATAATCAGAAGATGGGGCTGAGTCCGATTATGCAACA 2984 ||||||| |||| |||||||| ||||| | ||| | || || || || || ||||||| Sbjct 1601 GATCCACCTCCGGGCGCTGGGCAATAACCGGAAATTAGGCCTCAGCCCCATCCTGCAACA 1660 Query 2985 TGCCGAAACAATAGGCATGGGGATGAGCGGTCAGAAGTACACAGAAAGCTTCTTCAGCGG 3044 ||| ||||| || |||||||| |||||||| |||| || || || || |||| Sbjct 1661 TGCGGAAACCATCGGCATGGGCATGAGCGGGCAGAGATATACCAGTTCATTTTTTGGCGG 1720 Query 3045 TAATGCCCGTCCGGCGG 3061 |||||||| ||||||| Sbjct 1721 GAATGCCCGGCCGGCGG 1737 Score = 228 bits (252), Expect = 2e-55 Identities = 250/331 (76%), Gaps = 1/331 (0%) Strand=Plus/Plus Query 1722 AACGC-ATTACTACAGTGTGGCCCCGCGCTTCTGGGTACCGTATGACACGGTGTACAGCG 1780 ||||| ||| ||||||| | |||||||| |||||||| |||||||||||||| ||||||| Sbjct 286 AACGCCATTTCTACAGTATTGCCCCGCGGTTCTGGGTGCCGTATGACACGGTCTACAGCG 345 Query 1781 TCGAGAAAAATGAAGATAGACGGACAGCCGAACGCTTTCAGAAATGGGTGGAAATGGGCG 1840 | ||| | || ||| || | || | ||||| || || ||||||||||||| ||||| Sbjct 346 TTGAGCAGAACGAAAATCGGCGCAGTGCCGAGCGTTTCCAGAAATGGGTGGCAATGGATC 405 Query 1841 TCCTGACCGTTACCGATGGTGCTGAGGTGGATTATCGCTACATCCTCGAGGAGGCCAAAG 1900 | |||||||| || || || ||||| || ||||| ||||||||||| || || |||||| Sbjct 406 TGCTGACCGTCACGGAAGGCGCTGAAGTCGATTACCGCTACATCCTTGAAGAAGCCAAAC 465 Query 1901 CGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGC 1960 ||| | | | | |||||||| ||| | || || || |||||||||||||| || Sbjct 466 TGGCCTGCCACCTGAACCCGGTCAATGAAGCGCCGATTGATCCCTTCGGGGCGACGGGAT 525 Query 1961 TGTCACATGACCTTGCTGATGAAGATCTGAATCCCGTCACTATCGTCCAGAACTTCGCCA 2020 |||| |||| | || ||||||| | || || ||| || ||||||||| || Sbjct 526 TGTCCCATGCGTTGGCGGATGAAGGCATTAACCCGATCATCATTACCCAGAACTTTACCC 585 Query 2021 ATATGTCCGATCCGATGAAAGAGCTGGAAGC 2051 | ||| ||| |||||||| ||||||||||| Sbjct 586 ACATGAGCGACCCGATGAAGGAGCTGGAAGC 616 Score = 168 bits (186), Expect = 2e-37 Identities = 150/188 (80%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 1522 GTCTTTAAAACAAAACACCTCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCAACCTG 1581 ||||||||||| || ||||| ||||||||||| || || || |||||| ||||| || Sbjct 17 GTCTTTAAAACCAAGCACCTGAATATCTGGGTCTCCGCCCGAGAGGCGTACTTCAATATG 76 Query 1582 GTGAGCTGGCAGAGCTGCGAGGATAAATCACTGACCCTTGAGCAGTTCGAGGGGCAGCCG 1641 ||||||||| | ||||| || | || ||||| || || ||||||||||| || || Sbjct 77 GTGAGCTGGAAACAGTGCGAAGACACGTCGCTGACACTGGAACAGTTCGAGGGACAACCC 136 Query 1642 TGCATTCTGGCCTTTGACCTGGCGCGTAAGCTGGATATGAACAGCATGGCGCGACTTTAT 1701 || |||||| ||||||||||| ||||||||||| |||||||||||||| || |||| | Sbjct 137 TGTTATCTGGCGTTTGACCTGGCCCGTAAGCTGGACATGAACAGCATGGCCCGGCTTTTT 196 Query 1702 ACCCGCGA 1709 ||||| || Sbjct 197 ACCCGTGA 204 Score = 98.7 bits (108), Expect = 2e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 2083 GGCAATCCCATCATGACCTGGTGTATCGGCAATGTGGTCGGCAAAAACATGCCAGGTAAC 2142 ||||| || || ||| |||||||||| ||||| ||||| || |||| || || || Sbjct 676 GGCAACCCGATTATGGCCTGGTGTATTGGCAACGTGGTGGGGAAAACGCTGGGCGGGAAT 735 Query 2143 GATGATTTAGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCGGTTGCA 2202 ||||| | ||| |||| ||||||||||| ||| | |||||| || || ||||| || Sbjct 736 GATGACATTGTGCGGCCCATCAAGGAGCAGAAGGACAGCAAAATTGACGGCGCGGTGGCC 795 Query 2203 CTGATTATGACGATCGGTCGGGCAATGCT 2231 ||||| ||| |||| || || || || || Sbjct 796 CTGATAATGGCGATGGGGCGCGCTATCCT 824 >seq12872 Length=1234 Score = 132 bits (146), Expect = 1e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 8741 GCCAGCGACGGTACCCGCTTTGGTCCCGGTCAGGCGATTGTCACCCCGGCGGTAATCAAA 8800 |||| |||||||||| |||| || |||| |||||| ||||| ||| || ||| Sbjct 1041 GCCAACGACGGTACCAGCTTCGGCGCCGGCGCGGCGATCGTCACGCCGATTGTGATCCGG 982 Query 8801 GGGGAACTGCTGGCAACCTACCGTCAGCTTGAGCGTGCGGGGATCGTGGAAAACTACGAA 8860 || || ||| | || | || | |||||||||| || || || || || ||| ||| Sbjct 981 GGCGAGCTGATCGCGGCGTATGGCGAGCTTGAGCGCGCCGGCATTGTCGAGAACATCGAG 922 Query 8861 CTGTTTAAGCAGTACCTGGTTGTGGAGCGTGATGCCAGCGTTCCGAACCGCCTGAACACG 8920 ||| || || ||||| |||| |||||||| || ||| ||||||||||||||| | Sbjct 921 GCGTTCAAAGAGCACCTGATTGTCGAGCGTGACGCGAGCAACCCGAACCGCCTGAACGTG 862 Query 8921 CTGTTCCCGCCTGACTATGTTAACCAGTTGCGTGTTTTTGC 8961 ||||| ||||||||| |||||||||||||| || || || Sbjct 861 CTGTTTCCGCCTGACCTGGTTAACCAGTTGCGCGTGTTCGC 821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118495142191264