Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq13049 104 2e-17 seq12388 96.9 3e-15 seq7750 95.1 1e-14 seq6327 91.5 1e-13 >seq13049 Length=11502 Score = 104 bits (114), Expect = 2e-17 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||||| || || |||||||| ||||| || ||| Sbjct 10081 GCCACCACGGAGACGGAGGACCAAGTGAAGAGTCGATTCTTTTTGGATGTTGTAGTCGGA 10022 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||| || ||||| |||||| |||| ||||||||||| || ||||| Sbjct 10021 CAAGGTGCGGCCGTCTTCAAGTTGTTTGCCAGCAAAGATAAGACGTTGCTGGTCTGGAGG 9962 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACTG-TGTCGGTGGGCTCC 139714 | ||||||||||| |||||| ||| | |||| || || |||| | || || Sbjct 9961 GGTTCCTTCTTTGTCCTGGATTTTAGCTTT--GACGTTCTCAATGCTGTCTGAGGCTTCG 9904 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || | ||| || || || | || || ||||| || ||||| Sbjct 9903 ACTTCGAGAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAGATCTGCAT 9854 >seq12388 Length=21549 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 139541 CCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATT 139600 || || | ||| | ||| ||||||| || || || || ||||| || ||||| || Sbjct 16013 CCACGGAGACGGAGAACCAAGTGAAGAGTCGATTCCTTCTGAATATTGTAATCAGACAGG 15954 Query 139601 GTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATG 139660 |||| ||||| ||||| || || || |||| ||||| || ||||||||||| || Sbjct 15953 GTGCGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGTTGATCGGGAGGGATT 15894 Query 139661 CCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACTG-TGTCGGTGGGCTCCACCT 139718 || || ||||| || ||||| || | |||| || || |||| | || || || | Sbjct 15893 CCCTCCTTGTCCTGGA--TTTTGGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGACTT 15836 Query 139719 CAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | | ||| | ||| || || |||||||| || || || |||||||| Sbjct 15835 CGAGGGTGATCGTTTTACCAGTCAACGTCTTGACAAAAATTTGCAT 15790 >seq7750 Length=8304 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | |||| || ||||| || |||||||| || ||| Sbjct 767 CCACCACGAAGACGAAGAACGAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAG 826 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| ||||| || || || |||||| ||||||||||| ||||| Sbjct 827 AGAGTACGACCGTCTTCAAGCTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGAGGA 886 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| || || | | ||| | |||||||| | || ||| Sbjct 887 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCGATTGTGTCGGACGCTTCGACC 946 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | || || ||||| | || || ||||| || ||||| Sbjct 947 TCAAGAGTGATGGTTTTTCCGGTGAGTGTCTTGACGAAGATCTGCAT 993 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || || ||||| || || | |||| | ||||||||||| Sbjct 1019 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCGAGCTGC 1078 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || |||||| ||||||||||| ||||| || ||||| || || ||| || Sbjct 1079 TTTCCGGCGAAGATCAACCGTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATCTTG 1138 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | ||| | |||||||| | || ||||||| || | || || ||||| Sbjct 1139 GCCTTGACATTTTCGATTGTGTCGGACGCTTCGACCTCAAGAGTGATGGTTTTTCCGGTG 1198 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | || || ||||| || ||||| Sbjct 1199 AGTGTCTTGACGAAGATCTGCAT 1221 >seq6327 Length=14581 Score = 91.5 bits (100), Expect = 1e-13 Identities = 234/354 (66%), Gaps = 12/354 (3%) Strand=Plus/Minus Query 153440 CAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGATGGCGCAT 153499 |||||||| | ||||| || |||||||||| || || || || || ||||| ||| | Sbjct 7188 CAACATGAAA---GCATCTGCTAAACCTTGAACTCCGATTCCAATTGGGCGATGACGCTT 7132 Query 153500 ATTAGAtttttttGCAGCTTC---AACAGGATAGAAATTGCGGTCGATAATTTTATTTAA 153556 || ||| ||| ||||||| ||| ||||||||||||| |||||||||||| || | Sbjct 7131 GTTTGATGTTT---CAGCTTCGGGAACCGGATAGAAATTGCAGTCGATAATTTTGTTAAG 7075 Query 153557 ACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGAAAATCAAACGTT---CCATT 153613 || |||| || | | ||| | | || ||||||| ||| | | Sbjct 7074 GTTACGTGTGACAACCTTGGTAATTGCATGAAGCTTTTCGTAATCAAAAGTTTTGTCTTC 7015 Query 153614 AATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGC 153673 ||| || ||| | |||||||| || || |||||||| || ||| || || | Sbjct 7014 TTTGACGAATCGGTTCAGAGCAATCGAAGCTAAATTGCAAACAGCGACTTCATCAGGAGA 6955 Query 153674 GCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTG 153733 | || || || ||||||| ||| | |||| || || || || ||| | || Sbjct 6954 CGAGTACTGCACGATTTCCGTACAGAGATTGGAACACTTAATAGTTCCAAGATTTTTCTG 6895 Query 153734 ATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTC 153787 ||| || | || ||||| || ||||| |||||||| ||| | || ||||| Sbjct 6894 ATTCGACTTTCTATTGCAAGCATCTTTGTAAAGCATGTACGGTATACCAGTTTC 6841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495975626198400