Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2527 111 2e-19 >seq2527 Length=10055 Score = 111 bits (122), Expect = 2e-19 Identities = 350/547 (64%), Gaps = 44/547 (8%) Strand=Plus/Minus Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||||||| ||||| || |||||||| || ||||| ||||| | ||| || ||||| Sbjct 5895 TTGATATTCGGAAACTCGCTTCTCAAAGAAATTTGTTTTGCCTTCGATTGAAATGTTTTC 5836 Query 13643 CATAAAATCAAATGGATT----------------TATT---GACATAAACACTTTAT-CA 13682 |||||| ||||| ||||| ||| ||| || | |||| | || Sbjct 5835 CATAAAGTCAAACGGATTCTGCATGTTGTAGATCTATAAACGACGTATAAACTTCGTACA 5776 Query 13683 CAAC--------------------CTAGTTCTAATAGTAATCTATCAGCAATAAACTCAA 13722 |||| | ||||| || ||| |||||||| | | |||| Sbjct 5775 CAACTAGCGTTACCTTGCTGATGCCCAGTTCAGTTAATAAGTGATCAGCAACATATTCAA 5716 Query 13723 TATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTA 13782 ||||||| ||||| | |||||||||||| || | | || |||| | ||||| Sbjct 5715 TATATTGCGACATGAGTCGACAATTCATACCAATCATATCCACTGGAAGAGCTTCGGTTA 5656 Query 13783 AAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAAT--CTCATTAGA 13840 | | || | ||| || ||||| || |||||| || | | | ||| | | Sbjct 5655 GATACTCCTGTTCGATTTGAACAGCTTCACGTATAAT--TTCACACACTTGCTCTTCTGT 5598 Query 13841 AGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATC 13900 || | || |||| || | | |||||||||||||| | ||| || || ||||| Sbjct 5597 TGGTTTTTGTTCGAGATACTTGTACACCAAACACGCAAAATCTCGATGGAGTCCTTCATC 5538 Query 13901 TCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCA 13960 ||| ||| | ||||| ||| || || ||||| | ||| ||||| || | ||| Sbjct 5537 TCTTGAAATTAACTCGTTACTGTGTGTCAAACCCGGCATAAGTCCACGTTTCTTCAGCCA 5478 Query 13961 AAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAA 14020 ||| ||||||||||| || || || || || ||||| || ||||||||||| || | | Sbjct 5477 AAAAATTGCAGCAAACGAGCCAGAGAAAAAGATTCCTTCCACTGCAGCAAATGCAACAAC 5418 Query 14021 TCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttt 14080 || ||||| || || || || || ||||||| | | ||| || | ||| || Sbjct 5417 ACGCATCCCAAATGAAGCATTCTTATTTTCAATCCATTGAATTGTCCAATCTGCTTTCTT 5358 Query 14081 tttAATA 14087 ||| ||| Sbjct 5357 TTTTATA 5351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479642536456800