Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq7750 100 2e-16 seq13049 91.5 1e-13 >seq7750 Length=8304 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | |||||||| | ||| |||||| || | ||||||||||| Sbjct 1497 CCTCCACGGAGACGCAGAACCAAATGCAAGGTGGACTCCTTCTGAATGTTGTAATCGGAG 1556 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| || | ||| || ||||| || ||||| ||||| ||||| | ||| Sbjct 1557 AGTGTACGACCGTCCTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGCGGA 1616 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | ||||| | | | |||||| || || || Sbjct 1617 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGATGCTTCAACT 1676 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || |||||||| || || || || || || |||||| Sbjct 1677 TCCAGAGTGATTGTCTTTCCGGTGAGGGTCTTAACGAAGATCTGCATT 1724 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | ||||| ||||| | ||||| |||| || | || || ||||| || Sbjct 802 CTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGACCGTCTTCAAGCTGCTTTCCGGCGAA 861 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 ||||| || || ||||| | || | |||||||| || |||| | ||||| | Sbjct 862 GATCAAGCGTTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATT 921 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | ||||||| || ||||| || | || || ||||||||||| || || || || Sbjct 922 TTCGATTGTGTCGGACGCTTCGACCTCAAGAGTGATGGTTTTTCCGGTGAGTGTCTTGAC 981 Query 43098 AAAAATTTGCATT 43110 || || |||||| Sbjct 982 GAAGATCTGCATT 994 >seq13049 Length=11502 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | ||||| || | ||| |||||||| | ||||| || || Sbjct 10537 GCCACCACGGAGACGGAGGACCAAGTGCAGAGTCGATTCCTTTTGTATGTTGTAGTCAGA 10478 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || || | || || | |||||| ||||| || ||||||||||||||||||| || Sbjct 10477 CAGGGTGCGGCCATCCTCAAGTTGTTTTCCGGCGAAGATCAATCGCTGTTGATCGGGAGG 10418 Query 43002 CACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | || ||||| || ||| ||| ||||||| | ||| |||| || |||| Sbjct 10417 GATTCCCTCTTTGTC-CTGAATCTTGGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGA 10359 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || ||||| || || || || ||||| || || ||||| Sbjct 10358 CTTCGAGAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAGATCTGCAT 10310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381303357530616