Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2468 158 2e-33 seq6327 156 6e-33 seq2527 134 2e-26 >seq2468 Length=4028 Score = 158 bits (174), Expect = 2e-33 Identities = 306/448 (68%), Gaps = 13/448 (3%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||||||||||||||||||| | || || || ||||||| ||||| ||| ||| Sbjct 3101 ACATCAAACATGCGAAATCTCGATGGAGTCCTTCATCTCGTGAAATTAGTTCATTG---- 3156 Query 42117 ACGTGAGT----CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT 42172 |||||| || ||||| || |||||||| || | |||||| || | ||||| ||| Sbjct 3157 CTGTGAGTCAACCCAGGCATGAGTCCACGCTTCTTCAACCAAAAAATGGCAGCAAACGAT 3216 Query 42173 CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA 42232 || || || ||||||||||| || || ||||| || || | | |||| | ||| Sbjct 3217 CCGGAGAAAAAGATTCCTTCCACGGCAGCAAAAGCGATCACGCGAATTCCAAACGAAGCA 3276 Query 42233 CTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 42289 | | || | ||||| ||||||| ||||| ||||| || | || || | | | Sbjct 3277 TTCTTATCTCCAATCCATCGGAGAGCCCAGTCGGCTTTCTTCTTAATGCAGGGAAACTCT 3336 Query 42290 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAA 42349 | || ||||||||||| ||| | ||| | ||| |||| |||| ||||||| Sbjct 3337 TGAATAGCATTAAAGAGCGTGTTCCTCTCAGTTAGATCGGTAACGTATGCTTCGATCATC 3396 Query 42350 AGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTG 42409 |||||| || |||||||| ||| | ||| ||||| || | |||||| | Sbjct 3397 TTTGAATACATCTCGGAATGAATTCCTTCGACGGCAATCTGGAAACTGTAGAACGAGAGC 3456 Query 42410 GCCTCGGTAACCTGTACTT-CTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCC 42468 || || | | || |||| |||| |||||| ||| | | ||||||||| || ||||| Sbjct 3457 GCTTCAGGCATCTTCACTTCCTGT-GTAAATCGCTCAACGAGATTTTCGTTTACGATTCC 3515 Query 42469 GTCACTGGCTGCAAAAAACGCCAATACA 42496 || || |||||||||||||| ||| Sbjct 3516 ATCTGAAGCAGCAAAAAACGCCAAAACA 3543 >seq6327 Length=14581 Score = 156 bits (172), Expect = 6e-33 Identities = 339/496 (68%), Gaps = 16/496 (3%) Strand=Plus/Minus Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231 ||||| || |||||||| | ||| | || || ||||| || |||| | ||| ||||| Sbjct 5941 TTGTTACCGCCCTGATCGACGTAACGTGCAGTATTATTGTACACTCGGAGCATAGGAATC 5882 Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAAT--ATTG 72288 | |||||| |||| ||||||||| || | || || | ||||| || ||||| | || Sbjct 5881 AAACCATTCGATGTACCATTGGTTCCAGCAATCATTG-TTCCAGATGCGCGAATGCAATG 5823 Query 72289 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 72348 ||| ||| || || || ||||| || || || | || || | | || Sbjct 5822 TGCATT--TAGGCCAATACCACCTGCTGACTTTGAAATGAGGGCACACTGCCAAAGAGTC 5765 Query 72349 TCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGA---CAT 72404 | |||| || || || ||| || ||| || ||| ||||| || ||| ||| Sbjct 5764 TTGAAGATCCCATCAATTGAATCGTCATGCATCGTCAAG-AGAAAGCA---AGAGCTCAT 5709 Query 72405 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 72464 ||| | || |||||| ||||| || | || |||||||| || || ||||| || Sbjct 5708 TTGTGGTTTACAAGTTCCTGCATTGAAAAGTGTGGGAGAAGCATGAGTGAACCAGCGATC 5649 Query 72465 AGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCG 72523 |||| | |||||| || || ||||| | || ||||| | ||| || ||||| || | Sbjct 5648 GGACATCAAATTGTAGGTTTCGATAGCGGCCTCGATATCTTCCTTG-TGAATTCCAACGG 5590 Query 72524 CGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGT 72583 |||||||||| | || ||| ||||| | ||||| | | || |||||| ||||| | Sbjct 5589 CGACACGCATAAGCAAATGTTGAGGACGCTCAACAACCCGTCCATCTATTTTTAACAAAT 5530 Query 72584 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 72643 | || ||||||||||| ||||| |||||| ||||||| || ||||| || || | || Sbjct 5529 ATGACCGCTCCAAAGTTTTGAAACCGAAATAGGTGTATGAGAAATCTCGGTCATACACAA 5470 Query 72644 TAACCGAATTGAGTTT 72659 || ||||| | ||| Sbjct 5469 TAGAAGAATTCAATTT 5454 Score = 143 bits (158), Expect = 4e-29 Identities = 334/495 (67%), Gaps = 14/495 (3%) Strand=Plus/Minus Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231 ||||| || || ||||| | ||| | ||| || ||||| || |||| | ||| || || Sbjct 4561 TTGTTACCGCCTTGATCGACGTAACGAGCAGTATTATTGTACACTCGGAGCATAGGGATT 4502 Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAAT--ATTG 72288 | |||||| |||| |||||||| || | ||| || | ||||| || ||||| | || Sbjct 4501 AAACCATTCGATGTTCCATTGGTTCCAGCGATCATTG-TTCCAGATGCGCGAATGCAATG 4443 Query 72289 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 72348 | ||| |||||| || || ||||| || || || | || || | | || Sbjct 4442 CGCATT--TAGACCAATACCACCTGCTGACTTCGAAATAAGGGCACACTGCCAGAGAGTT 4385 Query 72349 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA---CATT 72405 | || || || || || ||| || ||| | || || || || ||| |||| Sbjct 4384 TTGTAAATCCCATCAATTGAATCGTCATGCATCGTCAGGAGGAAGCA---AGAGCTCATT 4328 Query 72406 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 72465 || | | |||||| ||||| || | ||||||||||| || || ||||| || Sbjct 4327 TGTGGTTTGCAAGTTCCTGCATTGAAAAGTGTAGGAGAAGCATGAGTGAACCAGCGCTCG 4268 Query 72466 GACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGC 72524 |||| | |||||| || || ||||| | || ||||| | ||| || ||||| || || Sbjct 4267 GACATCAAATTGTAGGTTTCGATAGCGGCATCGATATCTTCCTTG-TGAATTCCAACAGC 4209 Query 72525 GACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTA 72584 ||||||||| | || ||| ||||| | || || | || || ||||| ||||| || Sbjct 4208 GACACGCATAAGCAAATGTTGAGGACGCTCGACAACCTGTCCATCCATTTTTAACAAATA 4149 Query 72585 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 || ||||||||||| ||||| ||||| ||||||| || || || || || | ||| Sbjct 4148 TGACCGCTCCAAAGTTTTGAAACCGAAATATGTGTATGAGAAATCCCGGTCATACACAAT 4089 Query 72645 AACCGAATTGAGTTT 72659 | ||||| | ||| Sbjct 4088 AGAAGAATTCAATTT 4074 Score = 140 bits (154), Expect = 4e-28 Identities = 361/546 (66%), Gaps = 17/546 (3%) Strand=Plus/Minus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 || ||| | || || || || | || | ||| || |||| |||| | ||||| | Sbjct 7322 GACCCTTCGTACGTCTCATAAGTACCATATTTCTCAGCTAATTCAGAGGATGCCTCAAGA 7263 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 || |||| ||||||||||| || || |||| |||||||| | |||| || ||| Sbjct 7262 GCACCATGGTAAATGGTTTCAAAGATTCTCTTGTTGAGATCACGAGCTTGAGGACTAGTG 7203 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 || ||||| | | || || || |||||||| |||||||| || || || || || Sbjct 7202 AACGGATACCGCATCAACATGAAAGCATCTGCTAAACCTTGAACTCCGATTCCAATTGGG 7143 Query 71554 CTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 71613 | || | ||| || || |||||||||| |||| ||||| |||| || |||||| Sbjct 7142 CGATGACGCTTGTTTGATGTTTCAGCTTCGGGAACCGGATAGAAATTGCAGTCGATAATT 7083 Query 71614 TTATTGAGATT---TCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA- 71669 || || || || | |||| || ||| | | | || || ||||||| Sbjct 7082 TTGTTAAGGTTACGTGTGAC---AACCTTGGTAATTGCATGAAGCTTTTCGTAATCAAAA 7026 Query 71670 --TCTCCCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACC 71727 | | | ||| | || || ||||| |||| || || | ||| ||||| || || Sbjct 7025 GTTTTGTCTTCTTTGACGAATCGGTTCAGAGCAATCGAAGCTAAATTGCAAACAGCGACT 6966 Query 71728 TCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCT 71787 |||| || | | || || | ||||| || || ||||| |||||| || ||||| Sbjct 6965 TCATCAGGAGACGAGTACTGCACGATTTCCGTACAGAGATTGGAACACTTAATAGTTCCA 6906 Query 71788 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCA 71847 | ||||| ||||| |||| | || || ||||| || ||||| || |||| ||||| Sbjct 6905 AGATTTTTCTGATTCGACTTTCTATTGCAAGCATCTTTGTAAAGCATGTACGGTATACCA 6846 Query 71848 GTTTCAATCTGAGATTCTATAATCGCTTT----CCAGACGACTCGAGCCTTTATTATATT 71903 |||||||| || | || ||| || ||| ||||| | | ||||| |||| || Sbjct 6845 GTTTCAATTTGCG---CTGTAA-CGATTTCCTCCCAGAGGGCACGAGCTTTTACGCGCTT 6790 Query 71904 CTTGTA 71909 |||||| Sbjct 6789 CTTGTA 6784 Score = 89.7 bits (98), Expect = 7e-13 Identities = 250/383 (65%), Gaps = 3/383 (1%) Strand=Plus/Minus Query 71530 CCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATA 71589 |||||||| || || || || || | || | ||| || || |||||||||| |||| Sbjct 6677 CCTTGAACTCCGATTCCAATTGGGCGATGACGCTTGTTTGATCTTTCAGCTTCGGGAACC 6618 Query 71590 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCC 71649 ||||| ||||| || ||||| || || || || | || || ||| | | Sbjct 6617 GGATAGTAATTGCAGTCAATAATCTTGTTAAGGTTACGTGTGATAACCTTGGTAATCGCA 6558 Query 71650 TTTAGTTTGAGAAAATCAAA---TCTCCCATCTATTACAAACACGTTCAAGGCAACAGAT 71706 | || || ||||||| | | | ||| | || | ||||| |||| || Sbjct 6557 TGAAGCTTTTCGTAATCAAAGGTTTTGTCTTCTTTGACGCATCGGTTCAGAGCAATCGAA 6498 Query 71707 GCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGA 71766 || | ||| ||||| || || |||| || | | || || | ||||||||||| ||| Sbjct 6497 GCTAAATTGCAAACAGCGACTTCATCAGGAGACGAGTACTGCACGATTTCAGTGCAGAGA 6438 Query 71767 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 71826 || ||| || || ||||| | ||||| || || |||| | || || ||||| || Sbjct 6437 TTGGAACATTTAATAGTTCCAAGATTTTTCTGGTTCGACTTTCTATTGCAAGCATCTTTG 6378 Query 71827 TAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 71886 || || || | || |||||||||||||| || ||| | || | | ||| | | | Sbjct 6377 TAGAGCATGTAAGGTGTACCAGTTTCAATTTGCGATGTAACGATTTCCTCCCAAAGGGCA 6318 Query 71887 CGAGCCTTTATTATATTCTTGTA 71909 |||||||||| |||||||| Sbjct 6317 CGAGCCTTTACGCGCTTCTTGTA 6295 >seq2527 Length=10055 Score = 134 bits (148), Expect = 2e-26 Identities = 304/448 (68%), Gaps = 27/448 (6%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| |||||| || ||||| | || || || |||||||| |||||| ||||| | Sbjct 5574 ACACCAAACACGCAAAATCTCGATGGAGTCCTTCATCTCTTGAAATTAACTCGTT----A 5519 Query 42117 ACGTGAGTC----CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT 42172 ||| ||| | ||||| || ||||| || || |||||||| || | ||||| || Sbjct 5518 CTGTGTGTCAAACCCGGCATAAGTCCACGTTTCTTCAGCCAAAAAATTGCAGCAAACGAG 5459 Query 42173 CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA 42232 ||||| || ||||||||||| ||||| ||||| |||| || | | ||| | ||| Sbjct 5458 CCAGAGAAAAAGATTCCTTCCACTGCAGCAAATGCAACAACACGCATCCCAAATGAAGCA 5399 Query 42233 CTGTCATGT---ATCCACTTTTGA---GCCCAATCGGCCTTCTTTTTTACACAAGGCA-- 42284 | | || | ||||| |||| | |||||| || |||||||||| | | || | Sbjct 5398 TTCTTATTTTCAATCCA---TTGAATTGTCCAATCTGCTTTCTTTTTTATATACGGAAAG 5342 Query 42285 TCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATC 42342 ||| | || || || ||||| |||| ||| ||| ||| |||| || || || Sbjct 5341 TCG--TGAATTGCGTTGAAGAGTGTATTTTGTTC--GACTGGATCGTTAATGTACGTTTC 5286 Query 42343 GATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 42402 |||||| ||||||||| || ||||| ||| | || |||||||| |||||| Sbjct 5285 GATCAATTTCGAATACATTTCAGAGTGAATTCCTTCCACTGCAATCTGAAAATTGTAGAA 5226 Query 42403 ACATCTGGCCTCGGTAACCTGTACTTC-TGTACAAAATCGTTCAGCTAAATTTTCGTTCA 42461 | | ||||| | | || ||||| ||| |||| ||| || | |||||| || | Sbjct 5225 AGAGAGTGCCTCAGGCATCTTCACTTCTTGTGTAAAA-CGTCCAATGAGATTTTCATTTA 5167 Query 42462 CTATTCCGTCACTGGCTGCAAAAAACGC 42489 | ||||| || ||||||||||| || Sbjct 5166 CGATTCCATCTGAAGCTGCAAAAAATGC 5139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671019636551520