Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq13049 118 1e-21 seq7750 86.0 6e-12 seq12388 84.2 2e-11 >seq13049 Length=11502 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || || |||| || ||||||||||| |||||||| ||| Sbjct 10081 GCCACCACGGAGACGGAGGACCAAGTGAAGAGTCGATTCTTTTTGGATGTTGTAGTCGGA 10022 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| |||||| |||||||| |||||| |||| ||||||||||| || ||||| Sbjct 10021 CAAGGTGCGGCCGTCTTCAAGTTGTTTGCCAGCAAAGATAAGACGTTGCTGGTCTGGAGG 9962 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 | ||||||||||| ||||| ||| | | || | |||| | || ||| || Sbjct 9961 GGTTCCTTCTTTGTCCTGGATTTTAGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGAC 9902 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | ||| || || || | || || ||||| || ||||| Sbjct 9901 TTCGAGAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAGATCTGCAT 9854 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| | ||| | ||| || || || || ||||||||||| Sbjct 7420 CCACCACGAAGACGGAGAACGAGATGGAGTGTTGACTCCTTCTGGATGTTGTAATCAGAG 7361 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| |||||||| |||||| |||| ||||||||||| || ||||| Sbjct 7360 AGGGTGCGGCCATCTTCAAGTTGTTTGCCAGCAAAGATAAGACGTTGCTGGTCTGGAGGA 7301 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| |||||||| ||||| || | | ||| | |||| | || ||| ||| Sbjct 7300 ATGCCCTCTTTGTCCTGGATTTTGGCCTTGACGTTTTCAATGCTGTCTGAGGCTTCGACT 7241 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||| || || || | || || ||||| || ||||| Sbjct 7240 TCGAGAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAGATCTGCAT 7194 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || || || | || ||||| |||||||||||||| || Sbjct 10537 GCCACCACGGAGACGGAGGACCAAGTGCAGAGTCGATTCCTTTTGTATGTTGTAGTCAGA 10478 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| || || |||||||| || || |||||| || || ||||||||||| Sbjct 10477 CAGGGTGCGGCCATCCTCAAGTTGTTTTCCGGCGAAGATCAATCGCTGTTGATCGGGAGG 10418 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || |||||||| ||| || ||| | | || | |||| | || ||| || Sbjct 10417 GATTCCCTCTTTGTCCTGAATCTTGGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGAC 10358 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | ||| || || || | || || ||||| || ||||| Sbjct 10357 TTCGAGAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAGATCTGCAT 10310 >seq7750 Length=8304 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| | ||||| || || || || || |||||||| ||| Sbjct 767 CCACCACGAAGACGAAGAACGAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAG 826 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| || || || || || |||||| ||||||||||| ||||| Sbjct 827 AGAGTACGACCGTCTTCAAGCTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGAGGA 886 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || || || | | ||| | ||||| | | ||| || Sbjct 887 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCGATTGTGTCGGACGCTTCGACC 946 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | || || ||||| | ||| || ||||| || ||||| Sbjct 947 TCAAGAGTGATGGTTTTTCCGGTGAGTGTCTTGACGAAGATCTGCAT 993 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||||| ||| ||||| | || || || || || |||||||||||| Sbjct 1497 CCTCCACGGAGACGCAGAACCAAATGCAAGGTGGACTCCTTCTGAATGTTGTAATCGGAG 1556 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||| |||||||| || || || |||||| || |||||||| || || Sbjct 1557 AGTGTACGACCGTCCTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGCGGA 1616 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || || || || | | || | ||||| | | ||| ||| Sbjct 1617 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGATGCTTCAACT 1676 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| ||||| | || || ||||| || ||||| Sbjct 1677 TCCAGAGTGATTGTCTTTCCGGTGAGGGTCTTAACGAAGATCTGCAT 1723 >seq12388 Length=21549 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 142961 CCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATT 143020 || || | ||| | ||| || |||| || ||||| || || || |||||||| || Sbjct 16013 CCACGGAGACGGAGAACCAAGTGAAGAGTCGATTCCTTCTGAATATTGTAATCAGACAGG 15954 Query 143021 GTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATG 143080 |||| ||||| || || || || || |||| ||||| || ||||||||||| || Sbjct 15953 GTGCGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGTTGATCGGGAGGGATT 15894 Query 143081 CCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCA 143140 || || ||||| ||||| ||| | | || | |||| | || ||| ||||| Sbjct 15893 CCCTCCTTGTCCTGGATTTTGGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGACTTCG 15834 Query 143141 ACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || | ||| || || ||||| || || || || |||||||| Sbjct 15833 AGGGTGATCGTTTTACCAGTCAACGTCTTGACAAAAATTTGCAT 15790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506924075384640