Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq9889 219 1e-52 seq6313 152 1e-32 seq12872 132 1e-26 >seq9889 Length=1737 Score = 219 bits (242), Expect = 1e-52 Identities = 248/331 (75%), Gaps = 1/331 (0%) Strand=Plus/Plus Query 1670 AACGC-ATTTTTACAGCGTGGCGCCACGTTTCTGGGTGCCGTATGACACGGTCTACAGTG 1728 ||||| |||| ||||| | || || || ||||||||||||||||||||||||||||| | Sbjct 286 AACGCCATTTCTACAGTATTGCCCCGCGGTTCTGGGTGCCGTATGACACGGTCTACAGCG 345 Query 1729 TTGAGAAAAATGAGGATCGCCGTACTGCGGAACGTTTTCAGAAATGGGTTGAAATGGGCT 1788 ||||| | || || |||| || | ||| || ||||| ||||||||||| | ||||| Sbjct 346 TTGAGCAGAACGAAAATCGGCGCAGTGCCGAGCGTTTCCAGAAATGGGTGGCAATGGATC 405 Query 1789 TTTTGACAGTAACTGATGGTGCGGAGGTGGATTACCGCTACATCCTTGAAGAGGCCAAAG 1848 | |||| || || || || || || || ||||||||||||||||||||||| |||||| Sbjct 406 TGCTGACCGTCACGGAAGGCGCTGAAGTCGATTACCGCTACATCCTTGAAGAAGCCAAAC 465 Query 1849 CTGCGAACAAACTGAACCCGGTCAGCGAATCCCCCATTGATCCATTTGGTGCCACCGGGC 1908 || | | ||||||||||||| ||| | || |||||||| || || || || || Sbjct 466 TGGCCTGCCACCTGAACCCGGTCAATGAAGCGCCGATTGATCCCTTCGGGGCGACGGGAT 525 Query 1909 TTTCACATGATCTAGCTGATGAAAACCTGAATCCCGTCACTATCATCCAGAATTACACCA 1968 | || |||| | || |||||| | | || || ||| || | |||||| | ||| Sbjct 526 TGTCCCATGCGTTGGCGGATGAAGGCATTAACCCGATCATCATTACCCAGAACTTTACCC 585 Query 1969 ACATGTCCGATCCGATGAAAGAACTGGAAGC 1999 ||||| ||| |||||||| || |||||||| Sbjct 586 ACATGAGCGACCCGATGAAGGAGCTGGAAGC 616 Score = 149 bits (164), Expect = 2e-31 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 1468 GTGTGTTCAAAACGAAGCATCTCAATGTATGGGTTGCCGCCCGCACAGCATTCTTTAATC 1527 |||| || ||||| ||||| || ||| | ||||| ||||||| || | ||| ||| Sbjct 15 GTGTCTTTAAAACCAAGCACCTGAATATCTGGGTCTCCGCCCGAGAGGCGTACTTCAATA 74 Query 1528 TGGTTTCCTGGCAAAACTGTGAGGATAAGACGCTGACGCTGGAACTGTTTGAGGGTCAAC 1587 |||| |||| || | || || || | | ||||||| ||||||| ||| ||||| |||| Sbjct 75 TGGTGAGCTGGAAACAGTGCGAAGACACGTCGCTGACACTGGAACAGTTCGAGGGACAAC 134 Query 1588 CCTGCGTACTGGCGTTCGATCTGGCTCGTAAGCTGGACATGAACAGCATGGCGAGGTTAT 1647 |||| |||||||| || ||||| |||||||||||||||||||||||||| || | | Sbjct 135 CCTGTTATCTGGCGTTTGACCTGGCCCGTAAGCTGGACATGAACAGCATGGCCCGGCTTT 194 Query 1648 TTACCCGTGA 1657 |||||||||| Sbjct 195 TTACCCGTGA 204 Score = 91.5 bits (100), Expect = 4e-14 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 2031 GGCAATCCCATCATGACCTGGTGTATCGGCAACGTGGTCGGCAAAACCATTCCGGGTAAC 2090 ||||| || || ||| |||||||||| ||||||||||| || ||||| | || || Sbjct 676 GGCAACCCGATTATGGCCTGGTGTATTGGCAACGTGGTGGGGAAAACGCTGGGCGGGAAT 735 Query 2091 GATGACGTGGTGAAGCCTATTAAGGAGCAGGCGGAAAATAAAATCGATGGTGCAGTTGCA 2150 |||||| | ||| ||| || ||||||||| ||| | ||||| || || || || || Sbjct 736 GATGACATTGTGCGGCCCATCAAGGAGCAGAAGGACAGCAAAATTGACGGCGCGGTGGCC 795 Query 2151 CTGATTATGGCGGTTGGCAGAGCCATGCTG 2180 ||||| |||||| | || | || || ||| Sbjct 796 CTGATAATGGCGATGGGGCGCGCTATCCTG 825 >seq6313 Length=4174 Score = 152 bits (168), Expect = 1e-32 Identities = 234/331 (71%), Gaps = 2/331 (1%) Strand=Plus/Plus Query 38687 ATGAAGTACCCAACAGTTATTGTCAATGGTGTGTCCGTTCGTGTTGATGAGGACGGACGC 38746 ||||| || |||||||| ||||| ||||| || || |||||||| ||| | | || | Sbjct 3713 ATGAAATATCCAACAGTAATTGTTAATGGAGTATCTGTTCGTGTGGATAATGCAGGCAGA 3772 Query 38747 TACAACTTAAACGATCTTCATGCAGCAGCAGTTGCAAATGGCGAGGCAACTGAATCTCAA 38806 || | | ||||||| || || || || ||||| ||| ||||| || || || || || Sbjct 3773 TATAGCCTAAACGACCTACACGCCGCCGCAGTATTAAAAGGCGAAGCGACAGAGTCACAG 3832 Query 38807 CGCCCCAGTAATTTTCTGAGGAGTGCA-CAGATTAAACGGTTCATTTCAGCACTAAAAGC 38865 || |||| || ||| | | | |||| ||| | ||| ||| |||| ||| | | | Sbjct 3833 CGACCCAACAAATTTATTCGTAATGCATCAG-TAAAAAAGTTTGTTTCCGCATTGGACTC 3891 Query 38866 CAAAGCTCAAAAAAGAGCTTTGAAAGAAATTCAACCACTTAAAGTAATAAAGGGTGGGGT 38925 || | |||||||| | ||||||||| |||| ||||||| || | || || || | Sbjct 3892 CAGAAGACAAAAAAGTCGTCTGAAAGAAAATCAATCACTTAAGGTTGTTAATGGGGGCGC 3951 Query 38926 TGATTCTGGTGTGTGGGGTGTTGAACTACTGGCAATCAGATATGCAGCATGGATTAAGCC 38985 ||| || || ||||||| || || |||| || | |||||||| ||||||||||| Sbjct 3952 TGACCAAGGCGTATGGGGTGCAGAGCTTTTGGCTATTCGCTATGCAGCCTGGATTAAGCC 4011 Query 38986 GGAATTTGAAATCGAAGTTTATGAAGTTTTC 39016 || |||||||| ||||||||| |||| Sbjct 4012 TGAGTTTGAAATTAGTGTTTATGAAACTTTC 4042 >seq12872 Length=1234 Score = 132 bits (146), Expect = 1e-26 Identities = 178/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 8930 GCTAATGATGGTACGCGTTTCGGGTCTGGTCAGGCCATTGTCACGCCTGCCGTTATCCGT 8989 || || || ||||| | ||||| | || ||| || |||||||| || ||||| Sbjct 1041 GCCAACGACGGTACCAGCTTCGGCGCCGGCGCGGCGATCGTCACGCCGATTGTGATCCGG 982 Query 8990 GGTGAGCTGGGATCAACATATCGCCAGATGGAGCGGGAAGGCATCGTGGAAAACTTCGAT 9049 || |||||| | | ||| || || | ||||| | ||||| || || ||| |||| Sbjct 981 GGCGAGCTGATCGCGGCGTATGGCGAGCTTGAGCGCGCCGGCATTGTCGAGAACATCGAG 922 Query 9050 CTGTTCCAGCAACATCTGATAGTGGAGCGTAACGCGAACGATTCGAACCGCCTGGATGTG 9109 |||| | | || ||||| || |||||| |||||| | | ||||||||||| | ||| Sbjct 921 GCGTTCAAAGAGCACCTGATTGTCGAGCGTGACGCGAGCAACCCGAACCGCCTGAACGTG 862 Query 9110 CTGTTTCCGCCTGATTATGTCAATCAGTTACGTGTGTTTGCAGTGCTTAACCAGTTCCGT 9169 |||||||||||||| || || ||||| || ||||| || |||| |||||||||| Sbjct 861 CTGTTTCCGCCTGACCTGGTTAACCAGTTGCGCGTGTTCGCGCTGCTGTACCAGTTCCGC 802 Query 9170 CTGCAGTA 9177 |||||||| Sbjct 801 CTGCAGTA 794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128333476845064