Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq7750 113 3e-20 seq8226 89.7 4e-13 seq12388 87.8 1e-12 >seq7750 Length=8304 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| || || |||||||| |||||||| ||| ||| | | ||||||| Sbjct 2727 AACAAGATGAAGAGTTGACTCTTTTTGAATGTTGTAGTCGGAGAGAGTACGGCCGTCTTC 2786 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || || || ||| | |||||||| |||||||| ||||||||||| ||||| Sbjct 2787 AAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTG 2846 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||| || | || || || || |||||| || | ||||||||| || Sbjct 2847 GATCTTGGCCTTAACGTTCTCGATTGTGTCAGAGGCTTCTACCTCGAGGGTAATGGTCTT 2906 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || ||||| |||||||| Sbjct 2907 TCCAGTAAGAGTCTTCACAAAGATTTGCAT 2936 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||||||||| || || || || |||||||| ||| ||| | | ||||||| Sbjct 784 AACGAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGACCGTCTTC 843 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || || || ||| | ||||| ||||| || || ||||||||||||||||| Sbjct 844 AAGCTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 903 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||| ||| |||| || || ||| ||| || || | || |||||||| Sbjct 904 GATCTTGGCCTTGACATTTTCGATTGTGTCGGACGCTTCGACCTCAAGAGTGATGGTTTT 963 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || || || ||||| Sbjct 964 TCCGGTGAGTGTCTTGACGAAGATCTGCAT 993 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||||||||| || || || || |||||||| || ||| | | | | ||||| Sbjct 1012 AACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTC 1071 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || || || ||| | ||||| ||||| || || ||||||||||| || || Sbjct 1072 GAGCTGCTTTCCGGCGAAGATCAACCGTTGCTGATCTGGAGGAATTCCTTCCTTATCCTG 1131 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||| ||| |||| || || ||| ||| || || | || |||||||| Sbjct 1132 GATCTTGGCCTTGACATTTTCGATTGTGTCGGACGCTTCGACCTCAAGAGTGATGGTTTT 1191 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || || || ||||| Sbjct 1192 TCCGGTGAGTGTCTTGACGAAGATCTGCAT 1221 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | ||||| || |||||||| ||||||||||| ||||| |||||| Sbjct 1353 TTACCGGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATTTTG 1412 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| |||| || || || ||| || || | ||||||||| || || ||| Sbjct 1413 GCCTTGACATTTTCGATTGTGTCAGACGCTTCGACCTCAAGGGTAATGGTCTTTCCGGTC 1472 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | ||||||||| || || ||||| Sbjct 1473 AAAGTTTTTACGAAGATCTGCAT 1495 >seq8226 Length=1064 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 15207 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTT 15266 |||| || | |||||| |||||| | ||||| || || ||||| || || ||||| | Sbjct 628 CGTCCTCAAGTTGTTTTCCAGCGAAGATCAATCGCTGCTGGTCTGGAGGGATACCTTCCT 687 Query 15267 TGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAA 15326 |||| ||| ||| ||| ||| |||| ||| | || ||| || |||||||||| Sbjct 688 TGTCTTGAATCTTGGCCTTGACATTTTCAATGCTGTCTGAGGCTTCGACTTCTAAGGTAA 747 Query 15327 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || || || || || || |||||||||||||| Sbjct 748 TTGTCTTGCCAGTAAGGGTCTTGACAAAAATTTGCAT 784 >seq12388 Length=21549 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| ||||| || || || || || ||||| || ||| | | | ||||| Sbjct 15490 AACGAGATGGAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAGGGTGCGGCCATCTTC 15431 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || || || ||| | || | |||||| ||||| ||||||||||| ||||| Sbjct 15430 AAGCTGCTTCCCGGCGAAGATAAGACGTTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTG 15371 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| ||| || |||| || |||| ||| || |||| ||| || ||||| Sbjct 15370 GATTTTGGCCTTGACGTTTTCAATACTATCAGAGGCTTCGACTTCTAGGGTGATCGTTTT 15311 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||| || || || |||||||| || ||||| || Sbjct 15310 ACCAGTGAGGGTCTTTACAAAGATCTGCATGTT 15278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362116290831132