Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq13049 87.8 1e-12 >seq13049 Length=11502 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | ||||| |||||||| || ||||| || ||||| || | ||| || Sbjct 10062 ACCAAGTGAAGAGTCGATTCTTTTTGGATGTTGTAGTCGGACAAGGTGCGGCCGTCTTCA 10003 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---G 33277 | ||| || ||| ||| || | |||||||||||| | || | |||||||| || | Sbjct 10002 AGTTGTTTGCCAGCAAAGATAAGACGTTGCTGGTCTGGAGGGGTTCCTTCTTTGTCCTGG 9943 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | || ||| || | | ||| |||| || || || || ||||| |||||| Sbjct 9942 ATTTTAGC---TTTGACGTTCTCAATGCTGTCTGAGGCTTCGACTTCGAGAGTGATCGTT 9886 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || || || || || ||||| || |||||||| Sbjct 9885 TTACCAGTGAGGGTCTTCACGAAGATCTGCATGTT 9851 Score = 82.4 bits (90), Expect = 5e-11 Identities = 145/210 (69%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||| | ||| ||||| || || || ||||||||||| | || | || || | ||| Sbjct 7397 ATGGAGTGTTGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCAAGTTG 7338 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GCTAAT 33282 || ||| ||| || | |||||||||||| | || ||||| ||||| || | | | Sbjct 7337 TTTGCCAGCAAAGATAAGACGTTGCTGGTCTGGAGGAATGCCCTCTTTGTCCTGGATTTT 7278 Query 33283 CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCC 33342 ||| || || ||| ||| |||| || || || || ||||| |||||||| || Sbjct 7277 GGCC---TTGACGTTTTCAATGCTGTCTGAGGCTTCGACTTCGAGAGTGATCGTTTTACC 7221 Query 33343 CGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || || || ||||| || |||||||| Sbjct 7220 AGTGAGGGTCTTCACGAAGATCTGCATGTT 7191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318722229526296