Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2527 129 5e-25 seq2468 91.5 1e-13 >seq2527 Length=10055 Score = 129 bits (142), Expect = 5e-25 Identities = 312/463 (67%), Gaps = 16/463 (3%) Strand=Plus/Minus Query 13133 AGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGC 13192 |||| ||| ||| || ||| |||||||| | || | |||||||||||| |||| | Sbjct 5584 AGATACTTGTACACCAAACACGCAAAATCTCGATGGAGTCCTTCATCTCTTGAAATTAAC 5525 Query 13193 TCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA 13252 ||||| ||| | |||||||||||| || ||||| || | |||||| || |||||| Sbjct 5524 TCGTTACTGTGTGTCAAACCCGGCATAAGTCCACGTTTCTTCAGCCAAAAAATTGCAGCA 5465 Query 13253 AACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATA 13311 ||||| || || ||||| |||||||| ||||| ||||| || | |||| | ||| | Sbjct 5464 AACGAGCCAGAGAAAAAGATTCCTTCCACTGCAGCAAATGC-AACAACACGCATCCCAAA 5406 Query 13312 CGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTT-TTGTTTA---ACGC 13367 | | ||| ||| | || ||||| | | | ||| | |||||| || |||| ||| Sbjct 5405 TGAAGCATTCTTATTTTCAATCCATTGAATTGTCCAATCTGCTTTCTTTTTTATATACGG 5346 Query 13368 AGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTG--TCTAAAATATA 13425 | | | | |||||||| || | ||||| ||| |||| || ||| || Sbjct 5345 A----AAGTCGTGAATTGCGTTGAAGAGTGTATTTTGTTC--GACTGGATCGTTAATGTA 5292 Query 13426 AGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACC 13485 || || |||||| ||||||||| || ||||| ||||| || || || ||| Sbjct 5291 CGTTTCGATCAATTTCGAATACATTTCAGAGTGAATTCCTTCCACTGCAATCTGAAAATT 5232 Query 13486 ATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTT 13544 || ||| | ||||| | | || ||||| | |||||| | | | | |||| Sbjct 5231 GTAGAAAGAGAGTGCCTCAGGCATCTTCACTTCTTGTGTAAAA-CGTCCAATGAGATTTT 5173 Query 13545 CGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTG 13587 | || || || || || ||| |||||||| ||||| ||||| Sbjct 5172 CATTTACGATTCCATCTGAAGCTGCAAAAAATGCAAGAATGTG 5130 >seq2468 Length=4028 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/158 (73%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTT--TGA 13200 |||||| |||||| ||||| | || | ||||||||||| ||||| || || || Sbjct 3101 ACATCAAACATGCGAAATCTCGATGGAGTCCTTCATCTCGTGAAATTAGTTCATTGCTGT 3160 Query 13201 AAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACC 13260 | || | || ||||| || || || || || | |||||| || ||||||||||| || Sbjct 3161 GA--GTCAACCCAGGCATGAGTCCACGCTTCTTCAACCAAAAAATGGCAGCAAACGATCC 3218 Query 13261 CGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCA 13298 || ||||| |||||||| || || ||||| || |||| Sbjct 3219 GGAGAAAAAGATTCCTTCCACGGCAGCAAAAGCGATCA 3256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430907539973304