Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7750 145 2e-29 seq12388 127 5e-24 seq13049 125 2e-23 seq10049 123 6e-23 seq8226 111 4e-19 seq11914 98.7 2e-15 seq1186 91.5 3e-13 >seq7750 Length=8304 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || | || | ||| || ||||| | || || || |||||||| || ||||| | Sbjct 765 TTCCACCACGAAGACGAAGAACGAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGG 824 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 | ||||| | ||||||||| || || ||||| || || || | | || ||||| |||| Sbjct 825 AGAGAGTACGACCGTCTTCAAGCTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGAG 884 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 | ||||||||||| ||||| ||||| || || |||||||| | || ||| | ||| | Sbjct 885 GAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCGATTGTGTCGGACGCTTCGA 944 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||| || || || || || || || ||||| || || || ||||||||| Sbjct 945 CCTCAAGAGTGATGGTTTTTCCGGTGAGTGTCTTGACGAAGATCTGCATT 994 Score = 116 bits (128), Expect = 9e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || ||||| || | | |||||||||||| || |||||||| || || |||||||| Sbjct 3068 TTACCGGCAAAGATCAAACGCTGTTGATCAGGGGGGATTCCTTCCTTGTCTTGAATCTTG 3127 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || |||||||| | || ||| || ||| ||||| || || || ||||||||||| Sbjct 3128 GCCTTGACATTTTCGATAGTGTCGGAAGCTTCGACCTCAAGAGTGATGGTCTTACCAGTC 3187 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || ||||| || || ||||||||| Sbjct 3188 AGGGTTTTGACGAAGATCTGCATT 3211 >seq12388 Length=21549 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || ||||||||||| ||||||||||| || | || ||||| Sbjct 15489 ACGAGATGGAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAGGGTGCGGCCATCTTCA 15430 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || || || || || || | || || || ||||| |||||||| || || || Sbjct 15429 AGCTGCTTCCCGGCGAAGATAAGACGTTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGG 15370 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || || || || ||||| | |||| | ||| || ||||| || || || ||| Sbjct 15369 ATTTTGGCCTTGACGTTTTCAATACTATCAGAGGCTTCGACTTCTAGGGTGATCGTTTTA 15310 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || |||||||| |||||||| ||| Sbjct 15309 CCAGTGAGGGTCTTTACAAAGATCTGCATGTTG 15277 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||||||||| || ||||| || || | || ||||| || || ||||| Sbjct 15986 GTCGATTCCTTCTGAATATTGTAATCAGACAGGGTGCGGCCATCTTCAAGCTGCTTTCCG 15927 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||||||||| ||||| ||||| || || ||||| || || ||||| Sbjct 15926 GCGAAGATGAGACGCTGTTGATCGGGAGGGATTCCCTCCTTGTCCTGGATTTTGGCTTTG 15867 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | | | || | ||| || || || || || || |||||||| | || Sbjct 15866 ACGTTCTCAATGCTGTCTGAGGCTTCGACTTCGAGGGTGATCGTTTTACCAGTCAACGTC 15807 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 15806 TTGACAAAAATTTGCAT 15790 >seq13049 Length=11502 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | ||| || || ||||| || || || ||||| || || | || ||| Sbjct 10293 AGAACGAGATGGAGTGTTGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCT 10234 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || ||||||||||| || || | || || || || || |||||||| || ||| Sbjct 10233 TCAAGCTGCTTTCCAGCAAAGATAAGACGTTGCTGGTCTGGGGGGATTCCTTCCTTGTCC 10174 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || || || ||||| || || || | |||| | ||| || |||| ||||| ||| Sbjct 10173 TGGATTTTGGCTTTGACGTTCTCAATACTATCAGAGGCTTCGACTTCTAAGGTAATTGTC 10114 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||||||| || || ||||| |||||||| Sbjct 10113 TTGCCAGTAAGGGTCTTGACAAAGATCTGCAT 10082 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || || || || |||||||| || || | || || || ||||||||||| Sbjct 10506 GTCGATTCCTTTTGTATGTTGTAGTCAGACAGGGTGCGGCCATCCTCAAGTTGTTTTCCG 10447 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||||||||| ||||| ||||| ||||| ||||||||||| ||||| Sbjct 10446 GCGAAGATCAATCGCTGTTGATCGGGAGGGATTCCCTCTTTGTCCTGAATCTTGGCTTTG 10387 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | | | || | ||| || || || || || || |||||||| || || Sbjct 10386 ACGTTCTCAATGCTGTCTGAGGCTTCGACTTCGAGAGTGATCGTTTTACCAGTGAGGGTC 10327 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 10326 TTCACGAAGATCTGCAT 10310 >seq10049 Length=10599 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||||||||| ||||| || ||||| | ||||||||| || || ||||| Sbjct 9202 GTTGACTCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCGTCTTCAAGCTGCTTTCCG 9261 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| || || || || |||||||| || ||||| ||||| || || Sbjct 9262 GCGAAGATCAATCGCTGCTGGTCTGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTG 9321 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | | |||| | ||| || || || || || || |||||||| || || Sbjct 9322 ACGTTCTCAATGCTATCAGAGGCTTCGACTTCGAGAGTGATGGTTTTACCAGTGAGGGTC 9381 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || |||||||| ||| Sbjct 9382 TTCACGAAGATCTGCATGTTG 9402 Score = 105 bits (116), Expect = 2e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || ||||||||||| ||||| |||||||| || || | || ||| Sbjct 8407 AGAACAAGATGGAGGGTGGATTCTTTCTGGATATTGTAGTCAGACAGGGTGCGGCCATCT 8466 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || |||||||| |||||||| || | | ||| || || || || ||||| || ||||| Sbjct 8467 TCAAGTTGTTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGCGGGATTCCGTCCTTATCT 8526 Query 104468 TGAATCTTTGCTTTTACATTTTC 104490 || || || ||||| || ||||| Sbjct 8527 TGGATTTTGGCTTTGACGTTTTC 8549 >seq8226 Length=1064 Score = 111 bits (122), Expect = 4e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 104381 TTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGT 104440 || ||||| || | || | ||||| || |||||||||||||| || || | | ||| Sbjct 606 TTGTAGTCGGACAAGGTGCGGCCGTCCTCAAGTTGTTTTCCAGCGAAGATCAATCGCTGC 665 Query 104441 TGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCG 104500 || || ||||| || ||||| || || |||||||| || || |||||||| | | | || Sbjct 666 TGGTCTGGAGGGATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTTTCAATGCTGTCT 725 Query 104501 CTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | ||| || |||| ||||| ||||| |||||||| || || ||||| || ||||| Sbjct 726 GAGGCTTCGACTTCTAAGGTAATTGTCTTGCCAGTAAGGGTCTTGACAAAAATTTGCAT 784 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||||||||| || ||||| || || | || ||| Sbjct 801 AGAACGAGATGGAGGGTTGACTCCTTCTGAATATTGTAATCAGAAAGGGTGCGGCCATCT 860 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | |||||||| || || || | | ||| || || || || || || || || ||| Sbjct 861 TCCAACTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 920 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || || ||||| | | |||| | ||| || || || || || || Sbjct 921 TGAATCTTGGCCTTGACGTTTTCAATGCTATCAGAGGCTTCGACTTCGAGAGTGATTGTT 980 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| | || || ||||| || ||||| Sbjct 981 TTACCAGTCAACGTCTTGACAAAGATTTGCAT 1012 Score = 100 bits (110), Expect = 7e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || | ||| || |||||||| ||||| ||||| || | || | || || Sbjct 357 AGAACGAGGTGGAGTGTTGACTCTTTCTGGATATTGTAGTCCGACAAGGTGCGGCCATCC 416 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || |||||||| |||||||| || || | || |||||||| || ||||| || || ||| Sbjct 417 TCAAGTTGTTTGCCAGCAAAGATAAGACGTTGCTGATCAGGCGGGATTCCCTCCTTGTCC 476 Query 104468 TGAATCTTTGCTTTTACATTTTC 104490 |||||||| || || || ||||| Sbjct 477 TGAATCTTGGCCTTGACGTTTTC 499 >seq11914 Length=36757 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || || || || || | ||| || || ||||| |||||||| || ||||| ||||| Sbjct 2907 TTACCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTG 2966 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || ||||| || | ||| || || || ||||| || || || |||||||| || Sbjct 2967 GCCTTCACATTCTCGATGGTGTCCGAAGCCTCGACCTCGAGGGTGATTGTCTTACCCGTT 3026 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || ||||| || |||||||||||| Sbjct 3027 AGGGTTTTGACGAATATCTGCATT 3050 >seq1186 Length=9182 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || || | ||||||||||| || || || || || ||||| || || Sbjct 3183 TTACCAGCGAAGATAAGACGTTGTTGATCAGGCGGAATGCCCTCCTTGTCCTGGATTTTG 3242 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || |||||||| | ||| ||| | || || || || ||||| ||||| || || Sbjct 3243 GCCTTCACATTTTCGATGGTGTCGGACGCCTCGACTTCGAGCGTAATTGTCTTGCCCGTG 3302 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||||||||| Sbjct 3303 AGAGTTTTGACGAATATCTGCAT 3325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151188150334416