Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq2795 138 7e-28 seq11290 96.9 2e-15 >seq2795 Length=11366 Score = 138 bits (152), Expect = 7e-28 Identities = 344/511 (67%), Gaps = 20/511 (4%) Strand=Plus/Minus Query 80907 GATTTACTGATATCGGTCGGCGACCTTATCGATCGCGGTACTGAAAATGTCGAATGTCTG 80966 |||||||||||||| || |||||||| || || | || | ||||||||||||||| Sbjct 4995 GATTTACTGATATCAGTAGGCGACCTGATTGACAGGGGGGATCGAAATGTCGAATGTCTC 4936 Query 80967 GAACTATTGCAGATGCCCTGGTTCAGGGCAGTGATGGGGAACCATGAGCGGTTGATGCTC 81026 || || | | || ||||||||||| || ||| || ||||||| | || | | Sbjct 4935 GACCTGATAACGCAACCGTGGTTCAGGGCGGTTCGGGGCAATCATGAGCAGATGGCGATA 4876 Query 81027 GATGCGTTAAGTCCTGATGGCAACGTGAATAAC---TGGCTAATGAATGGCGGACAATGG 81083 |||||| || || | || || | |||| ||| | |||||||| || ||| Sbjct 4875 GATGCGCTATTTCACAACGGAGAC---AGTAACCTGTGGTTTTACAATGGCGGTCAGTGG 4819 Query 81084 TT-CTTCATGCTGGACACTGATCAGGAAATATTAGCCAGGGCGCTGGTGGAGCTGGTAAA 81142 || || ||| ||||| |||| |||||||||||||| || | | || | | || | Sbjct 4818 TTCCTGCAT-CTGGATGCTGAACAGGAAATATTAGCTCGGTCATTATTGAAACGGGCTGA 4760 Query 81143 GCGTCTGCCCTATATCATTGAGTTGAACACCGGGCAAGAAACTATCGTTATAGCCCATGC 81202 | | ||| || || ||| ||||||| || || ||| ||| || | |||||||| Sbjct 4759 GAAATTACCCCTGATTATCGAGGTGAACACAGGACATAAAAAAATCATTGTGGCCCATGC 4700 Query 81203 CGACTATCCGGATAATGAATACCAATTCGGTAAGGAGGTGCCGCTTTTCAA--CGTTGTC 81260 ||| ||||| ||| | ||||| | ||||| | ||||| | | ||| || || Sbjct 4699 CGATTATCCCGATGACGAATATGAGTTCGGCAGAGAGGT--TGACTGGCAATCTGTCATC 4642 Query 81261 TGGGCGCGCGAGCGTAT---CAGTGATTCGATGGATGATATTGGTGGCGAAATTTCGGGC 81317 ||| || | || || || || | | | |||||||| ||||| | ||| | ||| Sbjct 4641 TGGAACCGAGGCCGGATTTACAATGCT--GGT-GATGATATCGGTGGAGCAATCACAGGC 4585 Query 81318 GCAGATCGTTTTATCTTTGGTCACACTCCGGTGAAAAGCCCGAAGACA-TTCTGGAATCA 81376 || |||| || ||||| || |||||||| | || | || ||| |||||| || Sbjct 4584 GCTGATCTGTTCATCTTCGGCCACACTCCCGCACCAATAACCAA-ACAGAACTGGAACCA 4526 Query 81377 GCAGTATATCGACACTGGTGCCGTATTTTGC 81407 || ||||||||||| || || |||||| || Sbjct 4525 GCTTTATATCGACACAGGGGCGGTATTTGGC 4495 >seq11290 Length=3944 Score = 96.9 bits (106), Expect = 2e-15 Identities = 225/334 (67%), Gaps = 13/334 (4%) Strand=Plus/Minus Query 72253 GCATGATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAAGATAACCG-- 72310 || |||| ||| || |||||||| || ||||| ||| | || ||||| ||| | Sbjct 953 GCTTGATCATGGCGGATTACCTGCAGCTCATGCGTAGCCCAG-GC--CAAGAGAACAGGG 897 Query 72311 --AACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAA 72368 |||| |||| |||||||||||| || || |||| | | ||||| || || ||| Sbjct 896 TCAACG----AAATCAGCGAGATTTCTCGATCGCTCAAGGGGATCGCGAAAGAGTT-CAA 842 Query 72369 GTACCGGTGG-TGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACG 72427 | || | |||| | || || || ||||| ||| || | || | |||| || Sbjct 841 CTGCCCCTTCATGGCTCTCTCCCAGCTCAATCGCGAGCTGGAGCGCCGGCCCAACAAGCG 782 Query 72428 ACCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTAT 72487 || || ||| | ||| |||| || || || || ||||||||||| ||||| || || Sbjct 781 GCCAGTCAATGCCGATCTACGCGATAGCGGTGCGATCGAGCAGGACGCGGACCTCATCAT 722 Query 72488 GTTTCTGTATCGCGACGAAGTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGT 72547 ||| | || || ||||| ||||| || ||| | ||| | |||||| | || || | Sbjct 721 TTTTGTCTACCGGGACGAGGTTTACAACAAGGACACCGAGCTCAAGGGCGTCGCGGAACT 662 Query 72548 AATTATCGGAAAGCAACGAAATGGCCCAATTGGC 72581 || || || ||||| || || || || ||||| Sbjct 661 GATCATTGGCAAGCACCGCAACGGTCCCGTTGGC 628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303182529182892