Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_005857.1 Length=51601 Score E Sequences producing significant alignments: (Bits) Value seq10737 147 7e-31 >seq10737 Length=14001 Score = 147 bits (162), Expect = 7e-31 Identities = 386/580 (67%), Gaps = 17/580 (3%) Strand=Plus/Plus Query 15058 CCATGATGCTAGGCGGCGTCGTCCAGATGCTTTCCCCTCAGCCCGGAGGTCTAGCCCGCA 15117 |||||||||| || |||||||| |||||||| ||||| ||| || || || || || Sbjct 7605 CCATGATGCTGGGGGGCGTCGTGCAGATGCTATCCCCGATGCCGGGCGGACTGGCGCGAC 7664 Query 15118 GAGAATCACCCGAAAACAAAGCCTCTTATGCCTTTGGTGGCGTCACAAATACCGCATCAC 15177 | ||| ||||| || ||| |||| ||||||||||||||| || || ||| Sbjct 7665 GGGAAGATCCCGACAATAAACCCTCATATGCCTTTGGTGGCCCGGTTAACTCCATTGCAC 7724 Query 15178 AGGGCTATCCCGTAGGGCTTCTTTACGGCAAACGGCGGATTGGTGGCGCGATTATTTCCG 15237 |||| | ||||| | | |||||| | || || || || || || || ||||| | Sbjct 7725 AGGGAAACCCCGTTCCGTTGGGGTACGGCCAGCGCCGCATCGGGGGTGCCATCATTTCGG 7784 Query 15238 CCGGAATTTATGTCGAAGACCAGCAATAGATGTTTCAGTAAATAACACCCTCCAGTACAG 15297 | || ||||| | ||||||||||||||| | | ||| | | | |||| ||| Sbjct 7785 CGGGCATTTACGCCGAAGACCAGCAATA-ACGCATCATTGTTT-------TTCAGT-CAG 7835 Query 15298 GCCACCTTGCGGTGGCtttttttATGGACGCGATATGGCA-AATAACATAATCAAAGGGC 15356 | | | | || |||||||||||||| | ||||| | | | | || || ||||| Sbjct 7836 GTCGC--TCAGGCGGCTTTTTTTATGGGTGAACTATGGGACAGCATCTTATTC--AGGGC 7891 Query 15357 -GCAAAGGTGGCAGCTCAAGCCAGCGCACGCCGACGGAGCAGCCGGATGATTTACAGTCC 15415 |||| || |||| ||| | ||||||||| || ||||||| | || || Sbjct 7892 AGCAAGGGCGGCAATGAAAGTCCACGCACGCCGGTCGAATCGCCGGATTCCCTGCAATCG 7951 Query 15416 GTAGCAAAAGCCAAAATTCTCATCGCGCTGGGCGAGGGAGAATTTGCAGGTGAATTAACG 15475 | | |||||||| | | |||||||| || || || ||||| || | | | Sbjct 7952 ACCTCGTATGCCAAAATCGTATTGGCGCTGGGGGAAGGTGAGTTTGCGGGCGGGCTGAAC 8011 Query 15476 GGCAAGGATATTTATCTAGATGGTACCCCGCTATTAAATGCCGATGGGTCA-GAGAACTT 15534 |||| |||| | ||| ||| |||||||| | | |||| |||||| | ||||| Sbjct 8012 GGCACTAATATCTTTCTGGATAACACCCCGCTGATTGGTCCCGA-GGGTCAGGCAAACTT 8070 Query 15535 TTCCGGCGTGGCGTGGGAATTTCGTCCCGGAACACAGGCCCAAAAATATATTCAAGGCAT 15594 | || ||| ||||||||| || ||||| || | ||| | ||||||| ||||| Sbjct 8071 TGAGGGGGTGAAGTGGGAATTCCGCCCCGGTACGCCCCATCAAGACTATATTCCCGGCAT 8130 Query 15595 TCCCGGCACTGAAAATGAAATCAGTGTCGGAACAGAAATA 15634 |||| | ||||||||| | | ||||| || ||| || Sbjct 8131 GCCCGCCGTGGAAAATGAACTGACCGTCGGGACTGAATTA 8170 Score = 129 bits (142), Expect = 2e-25 Identities = 645/1009 (64%), Gaps = 40/1009 (4%) Strand=Plus/Plus Query 15965 ACAGAAGTGATTGACGCGAAGCTGCGCTATCCCCACACAGCGCTGCTTTATGTCGAATTT 16024 || || ||||||||||| || ||| | || ||| | || || | | | || | ||| Sbjct 8495 ACCGAGGTGATTGACGCTAAACTGAGTTACCCCGAAACCGCCTTATTGTTCGTTCAGTTT 8554 Query 16025 GATTCCAGTCAGTTTAACGGCTCCATTCCACAGATTTCCTGCGAACCGCGTGGACGAGTT 16084 ||| ||| ||||| | || || || ||| | ||||| ||||| || || Sbjct 8555 GATGCCAAACAGTT---CCGCAATATCCCGCAGGTCTCCTGTGAACCCAAAATGCGCATT 8611 Query 16085 ATCCGCGTTCCTGATAACTACAACCCGGAGAGCCGCGAATATACCGGCACATGGACAGGT 16144 ||||| || || ||||| || | ||||| | ||| ||| | || ||| |||| Sbjct 8612 ATCCGGGTGCCGGATAATTATGATCCGGACCGTCGCACCTATTCGGGGGTGTGGGCAGGG 8671 Query 16145 GGCTTTAAGTGGGCCTGGACGGATAACCCGGCATGGATTTATTACGATATCGTTGTTTCA 16204 | |||||| ||||| ||||| || || ||||| ||||| || || | | || | | Sbjct 8672 GCCTTTAAATGGGCGTGGACAGACAATCCGGCGTGGATACTGTATGACCT-GATGATCAA 8730 Query 16205 -GACCGGTTTGGCCTAGGCAACCGTCTGACCAGC-GCGAATAT----CT--CTAAATGGA 16256 |||||||| || | || | ||| ||| ||| | |||| | || | |||||| Sbjct 8731 TGACCGGTTCAGCATTGGTACCCGGGTGAA-AGCTGAGAATCTGGCGCTGGCAAAATGGG 8789 Query 16257 CGCTGTACCAGATCGCACAATACTGCGATCAGATGGTCCCCGATGGTAAGGGAGGCGATG 16316 ||||||| || || | |||| || ||| ||| || ||||| || || || Sbjct 8790 ACCTGTACCGCATTGCCCGGCACTGTGACCAGCCGGTGCCGGATGGCAAAGGGGGG---- 8845 Query 16317 GCATGGAGCCTCGCTATCTCTGTAACGTCTACGTGCAGGAACGCAAC--GATGCGTACAC 16374 |||||||| | | ||| || ||||| | ||| ||||| || || | || Sbjct 8846 --ATGGAGCCGAGACACACCTGCAATGTCTATATTCAGT--CGCAAGAGGACGCCTGGAC 8901 Query 16375 CGTGCTGCGCGATTTTGCCGCCATTTTCCGGGGGATGACCTGCTGGAGCGGTGAGCAGAT 16434 || ||||| ||| ||| || || ||| || ||||||| |||| ||| | | Sbjct 8902 TGTCCTGCGGGATATTGTCGGTATCTTCAACGGCATGACCTTCTGG-GCGAACAATAACA 8960 Query 16435 TGTC-GTACAGGCTGATATGCCGCGTGATGTCGACTTTAACTACACGCGGGCGAACATTA 16493 || || | ||| |||||||| || || || || |||| ||| || || ||| | Sbjct 8961 TGAATGTGCTGGCGGATATGCCCCGCACGGTGGATTTAAACTTCACCCGCGCCAACGTGC 9020 Query 16494 TTGGC---AAACCGCGCTATTCAAGCAGCACCAGTAAGGCTCGTTACACCAACGCGCTGG 16550 | | ||| |||||| || || | || | | |||| ||| ||| ||| Sbjct 9021 GGGACGGTAAATTTACCTATTCCAGTGCCAGCGAGAAAACCCATTACTCCACGGCGATGG 9080 Query 16551 TCTCGTGGTCAGACCCGGCAAACGCCTACGCCGACGCAATGGAACCGGCGTTCGTCCCGG 16610 | |||||||| ||| |||| || || || ||||| ||| |||| ||| Sbjct 9081 TGAGCTGGTCAGATCCGCAGAACGGTTATCAGGATGCGGTGGAAGCGGTCTTCGACCCTC 9140 Query 16611 AGCTGGTCAGCAGGTA-CAGCTTTAACCAGCTGGAAGTGACGGCCATCGGGTGTACTCGA 16669 || | | || |||| ||| | ||| || ||| | || || || || || || || Sbjct 9141 AGTTAATGCGCCGGTATCAGGTGAAACAGGC-GGACATCACCGCAATTGGCTGCACCCGG 9199 Query 16670 CAGAGCGAAGCCCACCGTAAGGGCCTGTGGGGCATACTG---ACCAACAACAAAGACCGC 16726 ||||| || ||||| || ||| ||||| ||||| |||||| | | ||||| Sbjct 9200 CAGAGTGAGGCCCAGCGGCGCGGCAAGTGGG---TACTGTATACCAACCAGTATGACCGG 9256 Query 16727 ATGGTTGAGATTGATGTGGGGCTGGACGGTAAAATCCCGCAGCCGGGCTACATCATTGGA 16786 ||||| || ||||||||||| || ||| ||| ||| || || || || || Sbjct 9257 ATGGTCACCTTTACCGTGGGGCTGGAGGGCCGAATTCCGTTGCCCGGTTATATTATCGGG 9316 Query 16787 CTGGCTGATGAA--CTTCTGGCCGGACGCGTGAACGGCGGGCGTATCAGCGCAGTTAATG 16844 |||| |||||| ||||| |||| ||||| || |||||||||||||| | | ||| Sbjct 9317 GTGGCGGATGAAGCCTTCT--CCGGTCGCGTACTGGGTGGGCGTATCAGCGCGGCTGATG 9374 Query 16845 GACGGGTGATTACCCTTGACCGGGATACTGATGCAAAAGCTGGTGACCGGCTGCAGCTGA 16904 |||| || || || ||| | | || ||| ||| || || ||| | |||| Sbjct 9375 GACGTAATATCACGCTGGACAGAGTGTCTTCGGCACAAGTGGGCGAGCGGTTAATCCTGA 9434 Query 16905 ACCTGCCGTCAGGCATATCTCAGGCCCGGACGATCCAGTCAGTCAACGG 16953 |||||||||| |||| | | ||| || || || ||| | || || || Sbjct 9435 ACCTGCCGTCGGGCAAAGCCGAGGGGCGCACTATTCAGGCGGTGAAGGG 9483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164973674716712