Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq13049 132 4e-26 seq7750 118 1e-21 seq12388 107 2e-18 seq10049 102 7e-17 seq3937 82.4 7e-11 >seq13049 Length=11502 Score = 132 bits (146), Expect = 4e-26 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||||| ||| ||||||||||| | ||| || || || ||| | |||||| Sbjct 10518 ACCAAGTGCAGAGTCGATTCCTTTTGTATGTTGTAGTCAGACAGGGTGCGGCCATCCTCA 10459 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||||||| | ||||| |||| || ||||| ||||| || || |||||||| | | Sbjct 10458 AGTTGTTTTCCGGCGAAGATCAATCGCTGTTGATCGGGAGGGATTCCCTCTTTGTCCTGA 10399 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || || |||||| | | |||| | | ||||| || | ||||| ||||| Sbjct 10398 ATCTTGGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGACTTCGAGAGTGATCGTTTTA 10339 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| || || ||||| ||||||||||||| Sbjct 10338 CCAGTGAGGGTCTTCACGAAGATCTGCATGC 10308 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | ||| ||||| ||||| | ||| || ||| || ||| | || || Sbjct 10062 ACCAAGTGAAGAGTCGATTCTTTTTGGATGTTGTAGTCGGACAAGGTGCGGCCGTCTTCA 10003 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||| || ||||||| | | |||||| |||||||| | ||||||||||| | Sbjct 10002 AGTTGTTTGCCAGCAAAGATAAGACGTTGCTGGTCTGGAGGGGTTCCTTCTTTGTCCTGG 9943 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| || |||||| | | |||| | | ||||| || | ||||| ||||| Sbjct 9942 ATTTTAGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGACTTCGAGAGTGATCGTTTTA 9883 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||||| || || ||||| |||||||||||| Sbjct 9882 CCAGTGAGGGTCTTCACGAAGATCTGCATG 9853 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| ||||| | ||| | ||| || || ||||| || Sbjct 7390 GTTGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCAAGTTGTTTGCCA 7331 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | | |||||| ||||||||||| || |||||||| | ||||| |||||| Sbjct 7330 GCAAAGATAAGACGTTGCTGGTCTGGAGGAATGCCCTCTTTGTCCTGGATTTTGGCCTTG 7271 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | |||| | | ||||| || | ||||| ||||| ||||| || || Sbjct 7270 ACGTTTTCAATGCTGTCTGAGGCTTCGACTTCGAGAGTGATCGTTTTACCAGTGAGGGTC 7211 Query 94991 TTCACAAAGATCTGCATG 95008 ||||| |||||||||||| Sbjct 7210 TTCACGAAGATCTGCATG 7193 Score = 98.7 bits (108), Expect = 9e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| ||||| | ||| | ||| || ||||| ||||| Sbjct 10278 GTTGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCAAGCTGCTTTCCA 10219 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | | |||||| ||||| || || ||||| ||||| | ||||| || ||| Sbjct 10218 GCAAAGATAAGACGTTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGGATTTTGGCTTTG 10159 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | | | |||| | ||||| || | || || || || |||||||| || Sbjct 10158 ACGTTCTCAATACTATCAGAGGCTTCGACTTCTAAGGTAATTGTCTTGCCAGTAAGGGTC 10099 Query 94991 TTCACAAAGATCTGCATGC 95009 || |||||||||||||||| Sbjct 10098 TTGACAAAGATCTGCATGC 10080 >seq7750 Length=8304 Score = 118 bits (130), Expect = 1e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| |||||| | ||||| || | |||||||||||||||||| ||||||||| Sbjct 839 TCTTCAAGCTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGAGGAATTCCTTCTTTG 898 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| ||| ||||| | ||||| |||| |||||| Sbjct 899 TCCTGGATCTTGGCCTTGACATTTTCGATTGTGTCGGACGCTTCGACCTCAAGAGTGATG 958 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| || || || || || ||||||||||| Sbjct 959 GTTTTTCCGGTGAGTGTCTTGACGAAGATCTGCAT 993 Score = 113 bits (124), Expect = 4e-20 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || |||||| | | |||| ||||| ||||| || || ||||| || | ||| ||||| Sbjct 1493 CATTCCTCCACGGAGACGCAGAACCAAATGCAAGGTGGACTCCTTCTGAATGTTGTAATC 1552 Query 94837 GCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCT 94894 | | ||||| || ||||| || || |||||| | ||||| || | ||||||||| Sbjct 1553 GG--AGAGTGTACGACCGTCCTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCT 1610 Query 94895 GGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG 94954 || ||||| ||||| || || | || || ||||||||| ||| |||||| | Sbjct 1611 GGCGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGATGCT 1670 Query 94955 TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | ||||| || ||||| || || || || || ||||||||||| Sbjct 1671 TCAACTTCCAGAGTGATTGTCTTTCCGGTGAGGGTCTTAACGAAGATCTGCAT 1723 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || ||||| |||||| | ||||| || | |||||||||||||||||| ||||| || Sbjct 1066 ATCTTCGAGCTGCTTTCCGGCGAAGATCAACCGTTGCTGATCTGGAGGAATTCCTTCCTT 1125 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || |||||||| ||| ||||| | ||||| |||| ||||| Sbjct 1126 ATCCTGGATCTTGGCCTTGACATTTTCGATTGTGTCGGACGCTTCGACCTCAAGAGTGAT 1185 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||| || || || || || ||||||||||| Sbjct 1186 GGTTTTTCCGGTGAGTGTCTTGACGAAGATCTGCAT 1221 Score = 105 bits (116), Expect = 6e-18 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| || | ||| || || ||||| | ||| || ||| | ||| | || || | Sbjct 2729 CAAGATGAAGAGTTGACTCTTTTTGAATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCAA 2788 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 |||| |||||| | ||||| || | || || ||||| ||||| ||||| ||||| | | Sbjct 2789 GCTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGGA 2848 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 | || ||||| ||| ||| ||||||| | || || || | || ||||| |||| Sbjct 2849 TCTTGGCCTTAACGTTCTCGATTGTGTCAGAGGCTTCTACCTCGAGGGTAATGGTCTTTC 2908 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||| ||||||||||| ||||| Sbjct 2909 CAGTAAGAGTCTTCACAAAGATTTGCAT 2936 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| || | || || ||||||||||| ||||| || || | || || ||||| | Sbjct 2127 CAAAGATCAAACGCTGTTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTGGCCTTAA 2186 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || ||| ||||| | ||||| |||| |||||||| |||||||||||||| | Sbjct 2187 CGTTCTCGATGGTGTCGGAAGCTTCGACCTCAAGAGTGATGGTCTTTCCAGTAAGAGTCT 2246 Query 94992 TCACAAAGATCTGCAT 95007 |||| ||||| ||||| Sbjct 2247 TCACGAAGATTTGCAT 2262 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| ||||||| || | || ||||| || || || ||||| ||||| | ||| || Sbjct 3068 TTACCGGCAAAGATCAAACGCTGTTGATCAGGGGGGATTCCTTCCTTGTCTTGAATCTTG 3127 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 |||||||| ||| |||||| | ||||| |||| |||||||| || ||||| Sbjct 3128 GCCTTGACATTTTCGATAGTGTCGGAAGCTTCGACCTCAAGAGTGATGGTCTTACCAGTC 3187 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 || ||||| || ||||||||||| Sbjct 3188 AGGGTTTTGACGAAGATCTGCAT 3210 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| | ||||| || | || || ||||| ||||| ||||| ||||| | ||||| Sbjct 1353 TTACCGGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATTTTG 1412 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 |||||||| ||| ||||||| ||||| |||| || ||||| ||||| || Sbjct 1413 GCCTTGACATTTTCGATTGTGTCAGACGCTTCGACCTCAAGGGTAATGGTCTTTCCGGTC 1472 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 | |||||| || ||||||||||| Sbjct 1473 AAAGTTTTTACGAAGATCTGCAT 1495 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| ||||||| || | ||| |||||||||||||| ||||| ||||| | || || ||| Sbjct 2397 CCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCC 2456 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || ||| | | || || | ||||| || | ||||| |||||||| || ||| Sbjct 2457 TTAACGTTCTCAATGGTATCTGAAGCTTCGACTTCCAGTGTGATCGTTTTTCCGGTGAGA 2516 Query 94988 GTTTTCACAAAGATCTGCAT 95007 || || || ||||||||||| Sbjct 2517 GTCTTGACGAAGATCTGCAT 2536 >seq12388 Length=21549 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || ||||| || ||| | ||||| | | |||||| ||||||||||| ||||| || Sbjct 15436 ATCTTCAAGCTGCTTCCCGGCGAAGATAAGACGTTGCTGGTCTGGAGGAATTCCTTCCTT 15377 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| ||||||||| | | | | |||| | ||||| || | ||||| Sbjct 15376 GTCTTGGATTTTGGCCTTGACGTTTTCAATACTATCAGAGGCTTCGACTTCTAGGGTGAT 15317 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||||| ||||| || || || ||||||||||||||| Sbjct 15316 CGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATG 15280 >seq10049 Length=10599 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| |||||| | ||||| |||| ||||| ||||| || || ||||| ||| Sbjct 9244 TCTTCAAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGCGGGATTCCTTCCTTG 9303 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||||| | | | |||| | ||||| || | |||||| Sbjct 9304 TCCTGGATCTTGGCCTTGACGTTCTCAATGCTATCAGAGGCTTCGACTTCGAGAGTGATG 9363 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||||| ||||| || || ||||| |||||||||||| Sbjct 9364 GTTTTACCAGTGAGGGTCTTCACGAAGATCTGCATG 9399 >seq3937 Length=20801 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| ||||||| || | |||||||||||| ||||| ||||| ||||| | || || ||| Sbjct 18853 CCGGCAAAGATCAAGCGTTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGGATCTTAGCC 18912 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 ||||| ||| ||||| | | || || |||| || ||||| | ||||| | | Sbjct 18913 TTGACATTTTCGATGGTGTCGGAGGCCTCAACCTCAAGGGTAATGGTCTCACCAGTCAAA 18972 Query 94988 GTTTTCACAAAGATCTGCAT 95007 || || || ||||||| ||| Sbjct 18973 GTCTTGACGAAGATCTACAT 18992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448211336922720