Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq9944 230 1e-55 seq13351 120 1e-22 seq9402 100 1e-16 >seq9944 Length=4879 Score = 230 bits (254), Expect = 1e-55 Identities = 302/406 (74%), Gaps = 12/406 (3%) Strand=Plus/Plus Query 9381 CCTCGCTTTCCACGAAGTCGCTGAAGGCTTTCAGCAGGGGTGCGCGTCTCGCCCGG-CGA 9439 |||| |||| ||| | ||| |||| || ||||||| | |||| || || || || | | Sbjct 4462 CCTCTTTTTCGACGTATTCGGTGAACGCCTTCAGCAATG-TGCGGGTTTCACCTGGGCCA 4520 Query 9440 TCGACCCCTTCCTGGCAGCCGATGAAGTCGCGGAAGTAGTCGGAGAGCTTTCTCCCGCCC 9499 ||||| ||||||||||||||||||||||||||||||||||| ||| ||| || ||| Sbjct 4521 TCGACGCCTTCCTGGCAGCCGATGAAGTCGCGGAAGTAGTCCGAGTTCTTCCTGCCGGTT 4580 Query 9500 TTGCCCTTGATGAACGAGATGTACTGCTTCGACTGCTTG--TTGTTGCGCCACTCGGAGA 9557 || || |||| ||| ||||||||||||||||| | ||| ||||||||||||||| | Sbjct 4581 TTACCTTTGACGAAGGAGATGTACTGCTTCGA--GTTTGGATTGTTGCGCCACTCGCTCA 4638 Query 9558 GGTTGATTCGCGCCGC-CAGGTGTAACTGGCCGAGGTCGAGGTGGCTCGACGGGGTGACG 9616 |||||| || || || |||| | || | |||| ||| |||| | || || Sbjct 4639 GGTTGAAGCGGGCAGCGCAGGAG-AAGTTGCCGGTGTCCAGGTAGTGTGAGACCACAACA 4697 Query 9617 TCCAG-TGACTCGTTCACCGCCGCCCCT-TCGCTGTGGTGCAGCAGGGCGATCGCCAGGT 9674 | || | ||| || || |||| | | ||| | || || || | |||||| ||||| Sbjct 4698 TTGAGATCACT-GTCCA-GGCCGACGGTCTCGATCTGTTGGAGGACCGCGATCATCAGGT 4755 Query 9675 AGTCGGTCATGCCCTGCTGGTAGTGGGCGAACAGTACGTAGCCGCCGGTGGAGAGGTTGG 9734 |||| |||| ||||||||||| || | ||| || || | ||||||||||||||||||| Sbjct 4756 AGTCAGTCAAACCCTGCTGGTAATGAGTGAAGAGCACATGACCGCCGGTGGAGAGGTTGG 4815 Query 9735 ACTCTTCCATCAGCTTCTGCAGGTGTTCCACCGCCTCGCGGCTGAA 9780 | || |||| |||||||||||||| ||||| || | ||||||| Sbjct 4816 ATTCCTCCAGAAGCTTCTGCAGGTGCTCCACGGCGACCAGGCTGAA 4861 Score = 179 bits (198), Expect = 2e-40 Identities = 246/341 (72%), Gaps = 2/341 (1%) Strand=Plus/Plus Query 7821 GCGGCATCGTTGAGCCAGAGGCATTCGATGCGGTCACGTGCGCCGTCGGCGAGGGCGTTC 7880 || || | ||||||||||||||||||| | || | | || || ||||| || | | Sbjct 3114 GCCGCCTGGTTGAGCCAGAGGCATTCGGTCCGACCTCTCGCTCCATCGGCATATGCCTGC 3173 Query 7881 C-GCTCGAGGCGGTGCCAGTGGCGGTAAAGGCGGTCGTAGAGCGGGCAGGGGTACCCAGA 7939 | ||| | |||| ||||| ||| || ||| || |||| ||||||||| || || Sbjct 3174 CTGCTT-ACCCGGTACCAGTCTTTGTAGAGATCGTCATAAAGCGCGCAGGGGTAGCCTGA 3232 Query 7940 GAGGACCACCATGCCGGTCAACCCCTTGAGGAACGCCGCCAGGTCCCGGTGCTGGTTGTC 7999 || || ||||| || | | || || |||| ||| || | | | || | | ||| Sbjct 3233 AAGTACGACCATTCCTTGCCTGCTCTGCAGAAACGTCGCGAGTTGCAGATGTTCTTCGTC 3292 Query 8000 GTCCAGTTCGTGTCGGTACGACTTGCCGGTAGCGTTGTGGCGCACCTTGGTGCTGCGAGT 8059 | || ||||| || || || ||||| || ||| ||||||| || || || |||||||| Sbjct 3293 GCTCAATTCGTAGCGATAGGATTTGCCCGTGGCGGTGTGGCGAACTTTTGTACTGCGAGT 3352 Query 8060 GGAATGGACGTAGGGCGGATCGACGTAGTGCAGCGTGCTCGGCCGGTCGTGATGCTCCAT 8119 |||||| || ||||| ||||| |||||||||| ||| |||||||||| || |||||||| Sbjct 3353 GGAATGCACATAGGGGGGATCCACGTAGTGCAAAGTGTTCGGCCGGTCATGGTGCTCCAT 3412 Query 8120 CAGCACCAGAGCGTCGCGGTTCTCGATCACCACGCCCTGTA 8160 | | ||| |||||||| | |||||| || || ||||||| Sbjct 3413 GATCGTCAGGGCGTCGCGTTGCTCGATAACTACCCCCTGTA 3453 Score = 161 bits (178), Expect = 4e-35 Identities = 145/182 (80%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 9104 ACCTTGGTGCCGAGGAGGTGTGCCTCGAAGCTGATCGACAGGCCTTCGGCGCGGCCGGTG 9163 || |||| |||||| ||||||||||| ||||||||||| || |||||||| ||||||||| Sbjct 4130 ACGTTGGAGCCGAGTAGGTGTGCCTCAAAGCTGATCGAGAGCCCTTCGGCACGGCCGGTG 4189 Query 9164 AAGCGGCGGAACTGGTTGAAGGTGCGCTTGTCCGCCGGGATCTCCGGCGACAGGCCGTAG 9223 || || ||||||||||||| ||||||||| ||||||||||| || |||||||||||| Sbjct 4190 AAACGACGGAACTGGTTGAGCACGCGCTTGTCGGCCGGGATCTCGGGTGACAGGCCGTAG 4249 Query 9224 TCCTTGTGCTGGATGAAGTCGTAGAACGCCCGTGGCTGCTGTTCGTCGATCAGTTCGGAA 9283 || ||| ||||| ||||| |||||| | || | | ||| |||| | ||| || Sbjct 4250 TCGCTGTTGCGGATGTGCTCGTAAAACGCCTGGGGGCGATCTTCATCGAGAACTTCAGAC 4309 Query 9284 AG 9285 || Sbjct 4310 AG 4311 Score = 154 bits (170), Expect = 6e-33 Identities = 201/280 (72%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 8247 AACCCCGTGCGTTCGCCGCTCGCCGCGGCGCTGCCGAATCCCTGGAAGCTGCGGACAACC 8306 ||||||||||| || ||||| || || || || |||| || ||||| ||||| ||| Sbjct 3605 AACCCCGTGCGCTCCCCGCTTGCAGCCGCACTAGCGAACCCTTGGAAAGAGCGGAGTACC 3664 Query 8307 ATCCGCCGGGCGCGCTCGAGCGGATCCGTCGTTTCCGCGTAGCTGGCTTCGAACTC---- 8362 |||||||||||||||||||| ||||| | ||| || |||||| | | || || Sbjct 3665 ATCCGCCGGGCGCGCTCGAGAGGATCTGCCGTCTCGCTGTAGCTCTCGGCAAATTCCNNN 3724 Query 8363 TTCACGGGCAAACGGGGTAAGCGCCAGGGCCTGGCGCAGTTCCTCGCCACGGTCCCGCGC 8422 ||||| || || || || || | | || || || | ||||||||||| || Sbjct 3725 NNNNNNNGCAAAGGGAGTCAGGGCGAGTACATTACGAAGCTCACCACCACGGTCCCGGGC 3784 Query 8423 GACGCGGAACAGGTTCACCACGTCCCCGTCGAGGTCGTTGTAGACCTCGGCGTAGCTGCG 8482 || |||||||| || || || || | ||| ||||||||||||| ||||||| ||| || Sbjct 3785 CACACGGAACAGATTGACTACTTCACAGTCCAGGTCGTTGTAGATCTCGGCGGGGCTTCG 3844 Query 8483 GGCCTTCCGCAGCAGGACAGAAGCCGCGCCGCCGAAAGGC 8522 | || |||||||| ||||| || || || || || ||| Sbjct 3845 AGGTTTGCGCAGCAGAACAGATGCGGCTCCACCAAATGGC 3884 >seq13351 Length=1193 Score = 120 bits (132), Expect = 1e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 57598 AACGGCATCCCGCAGGCGCAGGGCGAACTGAAGGACGCCGCGGTACGGCTGGCCGACTAC 57657 |||| ||| || | | |||||||| ||||||||| || | | ||| | |||| Sbjct 222 AACGACATTCCCAAAGACCAGGGCGAGCTGAAGGACCTGGCCATGGGTCTGCGCAGCTAC 163 Query 57658 ATCAAGAACCCGCAAGAGGAGGGGCAGGCGGTGCGCGGACTGCTGTTTGCGCAGTACCTC 57717 ||| | ||||| |||||||| ||||| |||||||| ||||||| ||||||||||| Sbjct 162 ATCCGCGATCCGCAGGAGGAGGGCCAGGCTGTGCGCGGCATGCTGTTCGCGCAGTACCTG 103 Query 57718 GGCGGGTCCGTCGCGTCAGCCTTCGTCAACATGACCCAGCC 57758 ||||| ||| | || || |||||||| |||||||||||||| Sbjct 102 GGCGGCTCCCTTGCCTCGGCCTTCGTGAACATGACCCAGCC 62 >seq9402 Length=611 Score = 100 bits (110), Expect = 1e-16 Identities = 177/255 (69%), Gaps = 5/255 (2%) Strand=Plus/Plus Query 62483 CCATGCGCCACTTTCTCGACCCGAGCGTTGATCGGCGCCGCGCGGTCCCTAGCCCAGAAG 62542 || || ||||| |||||||| || || |||||||| |||| |||| |||||| Sbjct 5 CCGTGGGCCACCTTCTCGACGCGGGCATTGATCGGTGCCGGCTTGTCCTGCGCCCAGTGT 64 Query 62543 GGCCGCCAGCCCCATCGAATCGGCTGAGCTACGAGCGCATCGC-CTTCGAGCCGTAGCGT 62601 |||||||||||||| || | | | | || || | || || | |||| || Sbjct 65 GGCCGCCAGCCCCAGCGCAGCAGGTCGGCGTGCAGGGTGTCATGCTGCAGGCCG-AGTAC 123 Query 62602 CGTCACGGCCGTCGATGGCGCAACGTTGTAGCGCTCTGACTGT---TCGCCGACGAGGTT 62658 || || || | || || ||||||||| || | | | ||||| ||| |||| Sbjct 124 CGCCAGCTGGGTGGTGGGGGCCACGTTGTAGTGCCCAAGCGGCGCATCGCCCACGCGGTT 183 Query 62659 GACCAGGACGTTGGGCATCGACAGCGCGTCGACGAACTCGTGCATGCCGGTGTACTGGCT 62718 |||||| ||||||||| ||| ||||| ||||||||||| |||||| ||||||||| Sbjct 184 GACCAGTGGGTTGGGCATGCTCAGGGCGTCCACGAACTCGTGGATGCCGTGGTACTGGCT 243 Query 62719 GAGCCTTCCGCACAT 62733 || | ||||||||| Sbjct 244 CAGTCGTCCGCACAT 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208462984470832