Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq12670 190 3e-44 seq2569 188 1e-43 seq2970 161 2e-35 seq6354 147 3e-31 seq3153 141 1e-29 seq2883 109 9e-20 >seq12670 Length=22322 Score = 190 bits (210), Expect = 3e-44 Identities = 203/268 (76%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16436 AAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGT 16495 ||||||||||||| ||| || || ||||||||||||||||| ||||| || || ||| Sbjct 7722 AAGCGTCATCGCAAGGTTCTGCGCGACAACATCCAAGGAATCACGAAGCCGGCCATTCGT 7663 Query 16496 CGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGT 16555 ||||| |||||||||||||||||||||||| |||| || || |||| ||||| | ||| Sbjct 7662 CGTCTCGCTCGTCGTGGTGGAGTCAAGCGTATCTCGGGGCTGATCTACGAAGAAACCCGT 7603 Query 16556 GATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCAC 16615 | || | || |||||||| | |||| ||| |||| | || ||| || ||| Sbjct 7602 GGCGTCCTCAAAGTCTTCCTCGAAGCCGTCGTCCGTGATTCCGTCACCTACTGTGAACAC 7543 Query 16616 GCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGT 16675 || || || ||||| |||||| | ||||| ||||||| || | || || ||||||||| Sbjct 7542 GCCAAGCGCAAGACCGTCACCGCAATGGACGTCGTCTACTCACTCAAGCGACAAGGCCGT 7483 Query 16676 AAGATTTATGGTTTTGGAAGTTAATCTT 16703 | | ||||| || |||||||||| || Sbjct 7482 ACCCTCTATGGATTCGGAAGTTAATTTT 7455 >seq2569 Length=10691 Score = 188 bits (208), Expect = 1e-43 Identities = 188/241 (78%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| || || ||||| | | |||| || ||||||||||||||||||||||| || || | Sbjct 1089 CGCCAAACGCCATCGTA-AGGTCTTGCGTGATAACATCCAAGGAATCACCAAACCCGCCA 1147 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| ||||||||||||||||| |||||| |||| ||| | |||| ||||| | Sbjct 1148 TTCGCCGTCTCGCTCGTCGTGGTGGAGTGAAGCGTATCTCCGGACTCATCTACGAAGAAA 1207 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| |||||||| | || |||| ||||| || |||| || Sbjct 1208 CCCGCGGTGTGTTGAAAGTCTTCCTCGAAGGAGTCATCCGCGATGCCGTCACCTATTGCG 1267 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| |||||||| |||||||||| |||| ||||||| Sbjct 1268 AGCACGCCAAGCGCAAGACCGTCACCGCCATGGATGTCGTCTATGCCCTGAAGCGTCAAG 1327 Query 16671 G 16671 | Sbjct 1328 G 1328 >seq2970 Length=5607 Score = 161 bits (178), Expect = 2e-35 Identities = 203/273 (74%), Gaps = 8/273 (3%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||| | | || || || || ||||||||||||||||||||||| || | Sbjct 2717 CGCCAAGCGCCATCGTAAGGTC-CTGCGCGACAACATCCAAGGAATCACCAAGCCCGCCA 2659 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||| || ||||| ||||| ||||||||||| |||| || || |||| ||||| | Sbjct 2658 TCCGTCGCCTCGCTCGCCGTGGAGGAGTCAAGCGCATCTCGGGCCTGATCTACGAAGAAA 2599 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC--TTTCC-ACTATA 16607 ||| || |||| |||||||| | | || ||| |||||| || || ||| | Sbjct 2598 CCCGTAGCGTCCTGAAAGTCTTCCTCGAAGCAGTCGTCCGTGATGCCGTTACCTACTGT- 2540 Query 16608 CCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTC 16667 || ||||| || || |||||||||||| ||||||| ||||||| || | || || | Sbjct 2539 --GAACACGCCAAGCGCAAGACTGTCACCGCCATGGACGTCGTCTACTCACTCAAGCGAC 2482 Query 16668 AAGGCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 ||||||| | | || || || || |||||| Sbjct 2481 AAGGCCGCACCCTCTACGGATTCGGGGGTTAAT 2449 >seq6354 Length=9978 Score = 147 bits (162), Expect = 3e-31 Identities = 196/270 (73%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||| | | || || || || ||||||||||||||||||||||| || | Sbjct 6882 CGCCAAGCGCCATCGTAAGGTC-CTGCGCGACAACATCCAAGGAATCACCAAGCCCGCCA 6824 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||| || ||||| ||||| ||||||||||| |||| || || |||| ||||| | Sbjct 6823 TCCGTCGCCTCGCTCGCCGTGGAGGAGTCAAGCGCATCTCGGGCCTGATCTACGAAGAAA 6764 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || ||| |||| | ||||| | |||| ||| |||||| | ||| || Sbjct 6763 CCCGAAGTGTCCTGAAAGTGTTCCTGGAAGCCGTCGTCCGTGATGCCGTTACCTACTGCG 6704 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| || || ||||||| ||||||| | |||| || || | Sbjct 6703 AGCACGCCAAGCGGAAGACCGTGACTGCCATGGACGTCGTCTACTCTCTGAAGCGACAGG 6644 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | | || || || || |||||| Sbjct 6643 GCCGCACCCTCTACGGATTCGGCGGTTAAT 6614 >seq3153 Length=1095 Score = 141 bits (156), Expect = 1e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || ||||| ||||| || || || ||||| || ||||| || Sbjct 400 CTACGTGATAACATCCAGGGCATCACAAAGCCCGCAATTCGCCGTCTCGCGCGTCGCGGA 459 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||||| | ||||| | |||| ||||| | ||||| ||| ||||| |||| Sbjct 460 GGAGTTAAGCGCATTTCTGGGCTAATCTACGAAGAAACTCGTGGTGTACTGAAGGCCTTC 519 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | ||||||| || || || ||| ||||||||| || || ||||||||| Sbjct 520 CTGGAAGGAGTTATCCGCGACGCCGTCACCTACTGCGAGCACGCCAAGCGCAAGACTGTC 579 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| | ||||| ||||||| || |||| |||||||| Sbjct 580 ACCGCGATGGACGTCGTCTACGCTCTGAAGCGTCAAGG 617 >seq2883 Length=17051 Score = 109 bits (120), Expect = 9e-20 Identities = 138/187 (74%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||| | | || || || || ||||||||||||||||| ||||| || | Sbjct 187 CGCCAAGCGCCATCGTAAGGTC-CTGCGCGACAACATCCAAGGAATCACGAAGCCTGCCA 129 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||| || ||||| ||||| ||||||||||| | || || || |||| ||||| | Sbjct 128 TCCGTCGCCTCGCTCGGCGTGGAGGAGTCAAGCGCATATCGGGCCTGATCTACGAAGAAA 69 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| || | ||| | |||||| | |||| ||| |||||| | ||| || Sbjct 68 CCCGTAGCGTCCTCAAGGTGTTCCTCGAAGCCGTCGTCCGTGATGCCGTTACCTACTGCG 9 Query 16611 AGCACGC 16617 ||||||| Sbjct 8 AGCACGC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79062169296636