Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2527 100 3e-16 >seq2527 Length=10055 Score = 100 bits (110), Expect = 3e-16 Identities = 418/654 (64%), Gaps = 20/654 (3%) Strand=Plus/Minus Query 21290 CCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAA 21349 |||||||| | |||||| ||| || ||| |||| |||||||| |||| | | |||| Sbjct 5752 CCCAGTTCAGTTAATAAGTGATCAGCAACATATTCAATATATTGCGACATGAGTCGACAA 5693 Query 21350 TTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACG 21409 |||||||| |||| | || |||||||||| || | | | | ||| || || Sbjct 5692 TTCATACCAATCATATCCACTGGAAGAGCTTCGGTTAGATACTCCTGTTCGATTTGAACA 5633 Query 21410 GCTTCAACAATTATATTTATTATCCTAGATGTACTAGGGG-----GATACA-ATAATTGT 21463 |||||| || || || | || | | | || || | | | ||| |||| Sbjct 5632 GCTTCACGTATAAT--TTCACACACTTGCTCTTCTGTTGGTTTTTGTTCGAGATACTTGT 5575 Query 21464 TTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTA 21523 ||| |||||| |||||||| | ||| | |||||||| || ||||| || ||| Sbjct 5574 ----ACACCAAACACGCAAAATCTCGATGGAGTCCTTCATCTCTTGAAATTAACTCGTTA 5519 Query 21524 GAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT 21583 ||| ||||| ||||| | ||| | || || | |||||| |||| ||||| | Sbjct 5518 CTGTGTGTCAAACCCGGCATAAGTCCACGTTTCTTCAGCCAAAAAATTGCAGCAAACGAG 5459 Query 21584 CCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAG-A 21642 || || || || || || || || |||||||||||||| | || || ||| || | Sbjct 5458 CCAGAGAAAAAGATTCCTTCCACTGCAGCAAATGCAACAACACGCATCCCAAATGAAGCA 5399 Query 21643 TTCTT-TATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTG 21701 ||||| | | || ||||||| || ||| | ||| || | ||| ||| | || Sbjct 5398 TTCTTATTTTCA--ATCCATTGAATTGTCCAATCTGCTTTCTTTTTTATATACGGAAAGT 5341 Query 21702 TATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNN 21761 | ||| || || || || ||||| ||| || |||| | ||| Sbjct 5340 CGTGAATTGCGTTGAAGAGTGTATTTTGTTCGACTGGATCGTTAATGTACGTTTCGATCA 5281 Query 21762 NNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATC 21821 |||||||||||| || || ||| | || |||||||| ||| ||| | Sbjct 5280 ATTTCGAATACATTTCAGAGTGAATTCCTTCCACTGCAATCTGAAAATTGTAGAAAGAGA 5221 Query 21822 TTGCCTCTGAACAT-TGAACCTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTAT 21879 |||||| | ||| | || || | ||||| ||| | | ||||||||||| || Sbjct 5220 GTGCCTCAG-GCATCTTCACTTCTTGTGTAAAA-CGTCCAATGAGATTTTCATTTACGAT 5163 Query 21880 TCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTT 21933 |||||| || ||||||||||| | || | ||| ||||| || ||||| Sbjct 5162 TCCATCTGAAGCTGCAAAAAATGCAAGAATGTGAGATATGAAATAACGCTCGTT 5109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531806041872480