Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2468 152 6e-32 seq6327 143 3e-29 seq2527 132 6e-26 >seq2468 Length=4028 Score = 152 bits (168), Expect = 6e-32 Identities = 305/448 (68%), Gaps = 13/448 (3%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||||||||||||||||||| | || || || || |||| ||||||||| ||| Sbjct 3101 ACATCAAACATGCGAAATCTCGATGGAGTCCTTCATCTCGTGAAATTAGTTCATTG---- 3156 Query 33356 ACGTGAGT----CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33411 |||||| || ||||| || |||||||| || | |||||| |||| ||| || ||| Sbjct 3157 CTGTGAGTCAACCCAGGCATGAGTCCACGCTTCTTCAACCAAAAAATGGCAGCAAACGAT 3216 Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33471 || || || ||||||||||| || |||||||| || || | | |||| | || Sbjct 3217 CCGGAGAAAAAGATTCCTTCCACGGCAGCAAAAGCGATCACGCGAATTCCAAACGAAGCA 3276 Query 33472 CTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33528 | | || | ||||| ||||||| ||||| ||||| || | || || | | | Sbjct 3277 TTCTTATCTCCAATCCATCGGAGAGCCCAGTCGGCTTTCTTCTTAATGCAGGGAAACTCT 3336 Query 33529 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 33588 | || ||||||||||| ||| | ||| | ||| |||| || | ||||||| Sbjct 3337 TGAATAGCATTAAAGAGCGTGTTCCTCTCAGTTAGATCGGTAACGTATGCTTCGATCATC 3396 Query 33589 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 33648 |||||| || |||||||| ||| | ||| ||||| || | |||||| | Sbjct 3397 TTTGAATACATCTCGGAATGAATTCCTTCGACGGCAATCTGGAAACTGTAGAACGAGAGC 3456 Query 33649 GCCTCGGTAATCTGTACTT-CTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCC 33707 || || | |||| |||| |||| |||||| || | | |||||| || || ||||| Sbjct 3457 GCTTCAGGCATCTTCACTTCCTGT-GTAAATCGCTCAACGAGATTTTCGTTTACGATTCC 3515 Query 33708 GTCACTGGCTGCAAAAAACGCCAATACA 33735 || || |||||||||||||| ||| Sbjct 3516 ATCTGAAGCAGCAAAAAACGCCAAAACA 3543 >seq6327 Length=14581 Score = 143 bits (158), Expect = 3e-29 Identities = 336/503 (67%), Gaps = 17/503 (3%) Strand=Plus/Minus Query 62598 TTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTC 62657 |||||||||| |||| | ||||| | ||||| | ||||||||||| ||||| || Sbjct 7292 TTCTCAGCTAATTCAGAGGATGCCTCAAGAGCACCATGGTAAATGGTTTCAAAGATTCTC 7233 Query 62658 TTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCC 62717 || || ||||| | |||| | ||| || ||||| | | || || || || Sbjct 7232 TTGTTGAGATCACGAGCTTGAGGACTAGTGAACGGATACCGCATCAACATGAAAGCATCT 7173 Query 62718 GCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCT 62777 ||||| |||||||| || || || || || | ||| | ||| || || |||||||||| Sbjct 7172 GCTAAACCTTGAACTCCGATTCCAATTGGGCGATGACGCTTGTTTGATGTTTCAGCTTCG 7113 Query 62778 GGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT---TCTGACAATTACTTTG 62834 |||| ||||| |||| || |||||||| || || || | ||||| || ||| Sbjct 7112 GGAACCGGATAGAAATTGCAGTCGATAATTTTGTTAAGGTTACGTGTGACA---ACCTTG 7056 Query 62835 ACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTATTACAAACATGTTCAAG 62891 | | | || || ||||||| | | ||| | || || ||||| Sbjct 7055 GTAATTGCATGAAGCTTTTCGTAATCAAAAGTTTTGTCTTCTTTGACGAATCGGTTCAGA 6996 Query 62892 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62951 |||| || || | ||| ||||| || || |||| || | || || || | || || Sbjct 6995 GCAATCGAAGCTAAATTGCAAACAGCGACTTCATCAGGAGACGAGTACTGCACGATTTCC 6936 Query 62952 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63011 || || ||||| |||||| |||||||| | ||||| ||||| |||| | || || Sbjct 6935 GTACAGAGATTGGAACACTTAATAGTTCCAAGATTTTTCTGATTCGACTTTCTATTGCAA 6876 Query 63012 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT- 63070 ||||| || ||||| ||| | || ||||||||||||| || | || ||| || ||| Sbjct 6875 GCATCTTTGTAAAGCATGTACGGTATACCAGTTTCAATTTGCG---CTGTAA-CGATTTC 6820 Query 63071 ---CCAGACGACTCGAGCCTTTA 63090 ||||| | | ||||| |||| Sbjct 6819 CTCCCAGAGGGCACGAGCTTTTA 6797 Score = 138 bits (152), Expect = 1e-27 Identities = 329/484 (68%), Gaps = 20/484 (4%) Strand=Plus/Minus Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 ||||| || |||||||| | ||| | || || ||||| || |||| | ||| ||||| Sbjct 5941 TTGTTACCGCCCTGATCGACGTAACGTGCAGTATTATTGTACACTCGGAGCATAGGAATC 5882 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGAT-ATAGCTTCCACTGGCACGAAT--ATTA 63482 | ||| || ||| |||||||||| || | || || | ||||| || ||||| | | Sbjct 5881 AAACCATTCGATGTACCATTGGTTCCAGCAATCATTG-TTCCAGATGCGCGAATGCAATG 5823 Query 63483 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63542 ||| ||| || || || ||||| || || || | || || | || | | Sbjct 5822 TGCATT--TAGGCCAATACCACCTGCTGACTTTGAAATGAGGGCACACTGCC--AAAGAG 5767 Query 63543 TCAT--AGATACCCTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGA---C 63596 || | |||| || || || ||| || ||| || ||| ||||| || ||| | Sbjct 5766 TCTTGAAGATCCCATCAATTGAATCGTCATGCATCGTCAAG-AGAAAGCA---AGAGCTC 5711 Query 63597 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 63656 ||||| | || |||||| ||||| || | || |||||||| || || ||||| Sbjct 5710 ATTTGTGGTTTACAAGTTCCTGCATTGAAAAGTGTGGGAGAAGCATGAGTGAACCAGCGA 5651 Query 63657 TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTAC 63715 || || | | |||||| || || ||||| | || ||||| | ||| |||||||| || Sbjct 5650 TCGGACATCAAATTGTAGGTTTCGATAGCGGCCTCGATATCTTCCTTG-TGAATTCCAAC 5592 Query 63716 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAA 63775 ||||||||||| | || || ||||| | ||||| | | | |||||| ||||| Sbjct 5591 GGCGACACGCATAAGCAAATGTTGAGGACGCTCAACAACCCGTCCATCTATTTTTAACAA 5532 Query 63776 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 63835 || || ||||||||||| ||||| |||||| ||||||| || ||||| || || | Sbjct 5531 ATATGACCGCTCCAAAGTTTTGAAACCGAAATAGGTGTATGAGAAATCTCGGTCATACAC 5472 Query 63836 AATA 63839 |||| Sbjct 5471 AATA 5468 Score = 123 bits (136), Expect = 3e-23 Identities = 321/481 (67%), Gaps = 14/481 (3%) Strand=Plus/Minus Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 ||||| || || ||||| | ||| | ||| || ||||| || |||| | ||| || || Sbjct 4561 TTGTTACCGCCTTGATCGACGTAACGAGCAGTATTATTGTACACTCGGAGCATAGGGATT 4502 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGAT-ATAGCTTCCACTGGCACGAAT--ATTA 63482 | ||| || ||| | |||||||| || | ||| || | ||||| || ||||| | | Sbjct 4501 AAACCATTCGATGTTCCATTGGTTCCAGCGATCATTG-TTCCAGATGCGCGAATGCAATG 4443 Query 63483 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63542 | ||| |||||| || || ||||| || || || | || || | | || Sbjct 4442 CGCATT--TAGACCAATACCACCTGCTGACTTCGAAATAAGGGCACACTGCCAGAGAGTT 4385 Query 63543 TCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGA---CATT 63599 | || || || || || ||| || ||| | || || || || ||| |||| Sbjct 4384 TTGTAAATCCCATCAATTGAATCGTCATGCATCGTCAGGAGGAAGCA---AGAGCTCATT 4328 Query 63600 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63659 || | | |||||| ||||| || | ||||||||||| || || ||||| || Sbjct 4327 TGTGGTTTGCAAGTTCCTGCATTGAAAAGTGTAGGAGAAGCATGAGTGAACCAGCGCTCG 4268 Query 63660 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGC 63718 || | | |||||| || || ||||| | || ||||| | ||| |||||||| || || Sbjct 4267 GACATCAAATTGTAGGTTTCGATAGCGGCATCGATATCTTCCTTG-TGAATTCCAACAGC 4209 Query 63719 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 63778 ||||||||| | || || ||||| | || || | || | ||||| ||||| || Sbjct 4208 GACACGCATAAGCAAATGTTGAGGACGCTCGACAACCTGTCCATCCATTTTTAACAAATA 4149 Query 63779 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 || ||||||||||| ||||| ||||| ||||||| || || || || || | ||| Sbjct 4148 TGACCGCTCCAAAGTTTTGAAACCGAAATATGTGTATGAGAAATCCCGGTCATACACAAT 4089 Query 63839 A 63839 | Sbjct 4088 A 4088 Score = 98.7 bits (108), Expect = 1e-15 Identities = 244/370 (66%), Gaps = 3/370 (1%) Strand=Plus/Minus Query 62724 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62783 |||||||| || || || || || | ||| | ||| || || |||||||||| |||| Sbjct 6677 CCTTGAACTCCGATTCCAATTGGGCGATGACGCTTGTTTGATCTTTCAGCTTCGGGAACC 6618 Query 62784 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62843 ||||| ||||| || ||||| || || || || | || || ||| | | Sbjct 6617 GGATAGTAATTGCAGTCAATAATCTTGTTAAGGTTACGTGTGATAACCTTGGTAATCGCA 6558 Query 62844 TTCAGTTTGAGAAAATCAAA---TCGCCCATCTATTACAAACATGTTCAAGGCAACAGAT 62900 | || || ||||||| | | ||| | || | ||||| |||| || Sbjct 6557 TGAAGCTTTTCGTAATCAAAGGTTTTGTCTTCTTTGACGCATCGGTTCAGAGCAATCGAA 6498 Query 62901 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 62960 || | ||| ||||| || || |||| || | || || || | || |||||||| ||| Sbjct 6497 GCTAAATTGCAAACAGCGACTTCATCAGGAGACGAGTACTGCACGATTTCAGTGCAGAGA 6438 Query 62961 TTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 63020 || ||| || |||||||| | ||||| || || |||| | || || ||||| || Sbjct 6437 TTGGAACATTTAATAGTTCCAAGATTTTTCTGGTTCGACTTTCTATTGCAAGCATCTTTG 6378 Query 63021 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 63080 || || ||| | || |||||||||||||| || ||| | || | | ||| | | | Sbjct 6377 TAGAGCATGTAAGGTGTACCAGTTTCAATTTGCGATGTAACGATTTCCTCCCAAAGGGCA 6318 Query 63081 CGAGCCTTTA 63090 |||||||||| Sbjct 6317 CGAGCCTTTA 6308 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 |||||||| | | ||||||||| | ||||| || || || ||||| || | ||| Sbjct 6186 CCAGGACACTTGTGCGGACACATAAGAGACCAATCCTTATCTTCTTTCACGCGCTCCATG 6127 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 || | |||||||||||| | || ||| ||||| | | | | ||| || ||| Sbjct 6126 AACAAATCAGGAATCCACAATGCATAAAACAGATCCCGAGCGCGCTCTTCTTCCGATCCA 6067 Query 63288 GTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63346 ||||| || ||||| | |||||| | | |||||||| |||||| ||||| | ||| || Sbjct 6066 GTATTTTTCTTTAATCT-GAGGAATTCGAAAATATCAGCATGCCAAGGTTCAACGTAAAT 6008 Query 63347 GGCCATAACTCCAGGCCG 63364 || | | ||||||| || Sbjct 6007 AGCGAAAGCTCCAGGACG 5990 >seq2527 Length=10055 Score = 132 bits (146), Expect = 6e-26 Identities = 401/608 (66%), Gaps = 31/608 (5%) Strand=Plus/Minus Query 33138 ATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 33197 ||| || || |||| |||||| ||| | | ||||||||| || || | | || Sbjct 5732 ATCAGCAACATATTCAATATATTGCGACATGAGTCGACAATTCATACCAATCATATCCAC 5673 Query 33198 TGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCT 33257 ||||||||| | || ||| | || ||||| || || || || |||||| || Sbjct 5672 TGGAAGAGCTTCGGTTAGATACTCCTGTTCGATTTGAACAGCTTCACGTATAATT--TCA 5615 Query 33258 AACGGTT--TCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCG 33315 || || ||||| | ||| || | || || ||| |||||| || ||||| Sbjct 5614 CACACTTGCTCTTCTGTTGGTTTTTGTTCGAGATACTTGTACACCAAACACGCAAAATCT 5555 Query 33316 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTC----CGGGCAT 33371 | || || || || ||||| ||||| ||||| | ||| ||| | ||||| Sbjct 5554 CGATGGAGTCCTTCATCTCTTGAAATTAACTCGTT----ACTGTGTGTCAAACCCGGCAT 5499 Query 33372 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTC 33431 || ||||| || || |||||||| || | ||| || || ||||| || ||||||||||| Sbjct 5498 AAGTCCACGTTTCTTCAGCCAAAAAATTGCAGCAAACGAGCCAGAGAAAAAGATTCCTTC 5439 Query 33432 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATCCACTT 33488 ||||||||||| |||| || | | ||| | || | | || | ||||| Sbjct 5438 CACTGCAGCAAATGCAACAACACGCATCCCAAATGAAGCATTCTTATTTTCAATCCA--- 5382 Query 33489 TTGA---GCCCAATCGGCCTTCTTTTTTACACAAGGCA--TCGTTTCTATGGCATTAAAG 33543 |||| | |||||| || |||||||||| | | || | ||| | || || || ||| Sbjct 5381 TTGAATTGTCCAATCTGCTTTCTTTTTTATATACGGAAAGTCG--TGAATTGCGTTGAAG 5324 Query 33544 AGATAGtttttttCATTACT--ATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 33601 || |||| ||| ||| ||| |||| || || |||||||| |||||||| Sbjct 5323 AGTGTATTTTGTTC--GACTGGATCGTTAATGTACGTTTCGATCAATTTCGAATACATTT 5266 Query 33602 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 33661 | || ||||| ||| | || |||||||| ||||||| | ||||| | |||| Sbjct 5265 CAGAGTGAATTCCTTCCACTGCAATCTGAAAATTGTAGAAAGAGAGTGCCTCAGGCATCT 5206 Query 33662 GTACTTC-TGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 ||||| ||| |||| ||| | | ||||||||| || ||||| || |||||| Sbjct 5205 TCACTTCTTGTGTAAAA-CGTCCAATGAGATTTTCATTTACGATTCCATCTGAAGCTGCA 5147 Query 33721 AAAAACGC 33728 ||||| || Sbjct 5146 AAAAATGC 5139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622836221956320