Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_007145.2 Length=37639 Score E Sequences producing significant alignments: (Bits) Value seq4423 147 5e-31 seq11062 87.8 4e-13 seq10415 82.4 2e-11 >seq4423 Length=667 Score = 147 bits (162), Expect = 5e-31 Identities = 152/197 (77%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 3426 TCCTGGGCACGAACGCGCGCACCGCGCAGTCGTACCACGGCAACTTCTACTTCGACGAAT 3485 ||||||| || ||||| || ||||| ||| || ||||||||||||||||||||||||| Sbjct 1 TCCTGGGGACCAACGCCCGGACCGCCCAGGGCTATCACGGCAACTTCTACTTCGACGAAT 60 Query 3486 ACTTTTGG--GTTCCGAAGTTCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGCGATGCA 3543 ||| ||| ||| |||||| || || |||||||||||| ||||||||||||||| Sbjct 61 TCTTCTGGACCTTC--AAGTTCAAGGAACTCAACAAGGTCGCCAGCGGCATGGCGATGCA 118 Query 3544 CAAGCGCTGGCGCAAGACGTACTTCAGCACGCCGTCCAGCGTCACGCACGAGGCGTACGC 3603 |||| | ||| ||| |||||| ||||| || ||| | | |||||||| ||| | Sbjct 119 GAAGCAGTACCGCCGGACCTACTTCTCGACGCCATCGAGCATGGCACACGAGGCCTACAC 178 Query 3604 GTTCTGGAGCGGCGCGC 3620 ||||||| ||||| || Sbjct 179 CTTCTGGACCGGCGAGC 195 Score = 95.1 bits (104), Expect = 3e-15 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 3752 GGCTGCGACCTGTTCGACATCGACGAGCTGCGCCGCGAGTACAGCGCCGAGGAATTCGCG 3811 ||||| || ||||||||| | ||||||||| | | |||||| |||||||| ||| | Sbjct 393 GGCTGTGATCTGTTCGACCTGGACGAGCTGAGGCTTGAGTACGACGCCGAGGCCTTCCAG 452 Query 3812 AATCTGCTCATGTGCCAGTTCATCGACGATTCGCTGTCGGTGTTCAAGCTGTCGGACCTG 3871 || ||||| |||||||||||||||||||| | | | ||| ||| || || Sbjct 453 AACCTGCTGATGTGCCAGTTCATCGACGACGGGGCGAGCATCTTCCCCCTGGCGATGTTG 512 Query 3872 CAACGCTGCATGGTCGACTCGTGGGAAGAATGGGCGGACGACTTCTCGCNNNNNNNNNNN 3931 || | ||||||||| ||| ||||| ||||| || |||| | | Sbjct 513 CAGCCCTGCATGGTGGACAGTTGGGACCTCTGGGCAGAGGACTACAAACCCTTCGCCGCA 572 Query 3932 NNNNCGTTCGGCTATCGCGAGGTGTGGGTCGGCTACGATCCGGCG 3976 ||||||| ||||| |||| ||||| ||||| || |||||| Sbjct 573 CGGCCGTTCGGTGATCGCCAGGTCTGGGTGGGCTATGACCCGGCG 617 >seq11062 Length=2017 Score = 87.8 bits (96), Expect = 4e-13 Identities = 154/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 25842 AGTCCGGCCAGATCACCATGATTTCGCGTTGGCCGAACTGCTTGCGGTACGCGGCGGCTT 25901 |||| |||||||||||||| ||| ||| ||||| | || |||||| ||| |||||| Sbjct 80 AGTCAGGCCAGATCACCATTGCTTCTCGTGCACCGAAGTTCTCGCGGTAGGCGACGGCTT 139 Query 25902 CTTCCTTCGTTTTGCAG--CCGGACGCCGACACATAGGCCATCGCGCGCAGCGACTGCGC 25959 | || || || |||| | || | ||| | |||||| | || |||| | ||| | Sbjct 140 CCTCTTTGGTCTTGCTGTCCCAGGCGCTG--ACATAGCAGAAGGCCCGCAACTGCTGGCC 197 Query 25960 GGTCGCCGCGAGCGCGGCCGCCACCGGCTGCGTATCGAGGCCGGGCGCCGCGAGAATGCG 26019 | ||| | || |||| || |||||| | | |||||||| ||| | | |||||||| Sbjct 198 GATCGAGACCAGGGCGGTGGCTACCGGCAGGCTGTCGAGGCCTGGCACGCCAAGAATGCG 257 Query 26020 CGGCTTCACGCCGA-GCGCACCCTGCGCGGCGAGCAGCGC 26058 |||| || |||| || || || |||||||| || || Sbjct 258 CGGCACCAAACCGACACGGGCCTTG-GCGGCGAGGAGGGC 296 >seq10415 Length=2169 Score = 82.4 bits (90), Expect = 2e-11 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 741 GATGTTTTCGGCCA-CGCAGCCGCAGCCGAAGTCTTCGACCACGTAGGCGTCGTTCGACG 799 |||||||||||||| |||| ||||||| | |||||||| ||| ||| || || || Sbjct 13 GATGTTTTCGGCCATGGCAG-CGCAGCCCAGGTCTTCGATCACATAGCTTTCATTGACCG 71 Query 800 ATTCGTAGTTCTCGATGCGGTCGCGTT 826 ||||| ||||||||||||||||||||| Sbjct 72 ATTCGAAGTTCTCGATGCGGTCGCGTT 98 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120302836200824