Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq6327 120 8e-22 seq2527 114 3e-20 >seq6327 Length=14581 Score = 120 bits (132), Expect = 8e-22 Identities = 265/389 (68%), Gaps = 14/389 (4%) Strand=Plus/Plus Query 363443 TTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATG 363502 ||||||| || || || ||| || | |||||||| || |||| || || ||| Sbjct 5554 TTGTTGAGCGTCCTCAACATTTGCTTATGCGTGTCGCCGTTGGAATTCACAAGGAAGATA 5613 Query 363503 TTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGC--TCGTGTATTCACGCACGCCAC 363560 | || ||||| || ||||| || || || | || | ||| ||||| || || | Sbjct 5614 TCGAGGCCGCTATCGAAACCTACAA--TTTGATGTCCGATCGCTGGTTCACTCATGCTTC 5671 Query 363561 GCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAA 363620 || ||| | | |||||| |||||| |||| ||||| ||| ||||||||||| | | Sbjct 5672 TCCCACACTTTTCAATGCAGGAACTTGTAAACCACAAATGAGCTCTTGCTTTCTCTTGAC 5731 Query 363621 AATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTC 363680 ||| | |||||||| || || || ||||| | || ||| | | ||||| || ||||| Sbjct 5732 GATGCATGACGATTCAATTGATGGGATCTTCAAGACTCTTTGGCAGTGTGCCCTCATTTC 5791 Query 363681 CAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATG--TTCGTGCA--CAGAACAGTT 363736 ||| ||||| || ||||| || || |||| || |||| ||| ||||| | Sbjct 5792 AAAGTCAGCAGGTGGTATTGGCCTA--AATGCACATTGCATTCGCGCATCTGGAACAAT- 5848 Query 363737 ACATTCGCGGCA-CAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGAC 363795 ||| || | || || | | |||||||| || |||| ||||| || |||| | Sbjct 5849 -GATTGCTGGAACCAATGGTACA-TCGAATGGTTTGATTCCTATGCTCCGAGTGTACAAT 5906 Query 363796 AATACTGCGAGGTACGTCGACCAGGGTGG 363824 |||||||| | |||||||| ||||| || Sbjct 5907 AATACTGCACGTTACGTCGATCAGGGCGG 5935 Score = 84.2 bits (92), Expect = 6e-11 Identities = 276/424 (65%), Gaps = 9/424 (2%) Strand=Plus/Plus Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 |||| ||||| || || | ||| || ||| | ||||||||| | ||||| | ||||| | Sbjct 6833 CGCAAATTGAAACTGGTATACCGTACATGCTTTACAAAGATGCTTGCAATAGAAAGTCGA 6892 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACA 364261 | ||| | | ||||| || ||| || ||| || ||||| || || | | ||| Sbjct 6893 ATCAGAAAAATCTTGGAACTATTAAGTGTTCCAATCTCTGTACGGAAATCGTGCAGTACT 6952 Query 364262 CCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTT--CCGGCGTTTGT 364319 | |||| || || || || || || | || ||||| || || ||| || || Sbjct 6953 CGTCTCCTGATGAAGTCGCTGTTTGCAATTTAGCTTCGATTGCTCTGAACCGA--TTCGT 7010 Query 364320 AAAAGATGGTA---CTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTG 364376 ||||| | | ||||||| || | | ||| ||| | ||| | || || | Sbjct 7011 CAAAGAAGACAAAACTTTTGATTACGAAAAGCTTCATGCAATTACCAAGGTTGTCACACG 7070 Query 364377 CAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAA 364436 || || |||| |||||||| |||| ||||| |||| ||||| || || || Sbjct 7071 TAACCTTAACAAAATTATCGACTGCAATTTCTATCCGGTTCCCGAAGCTGAAACATCAAA 7130 Query 364437 TATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCT 364496 | |||||||||||| ||||| | || || || || | || || | ||| ||| || | Sbjct 7131 CAAGCGTCATCGCCCAATTGGAATCGGAGTTCAAGGTTTAGCAGATGCTTTCATGTTGAT 7190 Query 364497 CAAGATGGCATTTGATTCG-CCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAA 364555 | | | || | | | ||| | ||||||| ||| || ||| ||||||||||| | Sbjct 7191 -GCGGTATCCGTTCACTAGTCCTCAAGCTCGTGATCTCAACAAGAGAATCTTTGAAACCA 7249 Query 364556 TGTA 364559 | || Sbjct 7250 TTTA 7253 >seq2527 Length=10055 Score = 114 bits (126), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAAT--GAACG-TTCATTCGCG 22488 || || || || ||||||||| | | ||||||| | ||| ||| | |||||| | | Sbjct 5352 ATAAAAAAGAAAGCAGATTGGACAATTCAATGGATTGAAAATAAGAATGCTTCATTTGGG 5411 Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 ||| || |||||||||||| || ||||| || || || ||||| | ||| |||| Sbjct 5412 ATGCGTGTTGTTGCATTTGCTGCAGTGGAAGGAATCTTTTTCTCTGGCTCGTTTGCTGCA 5471 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || |||||||| || ||||||| | ||||||||||| | || || ||||||||| Sbjct 5472 ATTTTTTGGCTGAAGAAACGTGGACTTATGCCGGGTTTGACACACAGTAACGAGTTAATT 5531 Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATG 22647 ||||||| || || ||| |||||||||||| || Sbjct 5532 TCAAGAGATGAAGGACTCCATCGAGATTTTGCGTGTTTG 5570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303115602745064