Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq12388 120 3e-22 seq13049 113 4e-20 seq7750 102 7e-17 >seq12388 Length=21549 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || ||||| ||| |||| ||| |||||||||| ||| Sbjct 15790 ATGCAAATTTTTGTCAAGACGTTGACTGGTAAAACGATCACCCTCGAAGTCGAAGCCTCA 15849 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||| ||| ||| | |||||| || || ||||| || || || |||||||||||| Sbjct 15850 GACAGCATTGAGAACGTCAAAGCCAAAATCCAGGACAAGGAGGGAATCCCTCCCGATCAA 15909 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||| ||||| || ||||||| | | | | | ||||| || Sbjct 15910 CAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGCACCCTGTCTGATTACAAT 15969 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| || ||||| || |||| || || Sbjct 15970 ATTCAGAAGGAATCGACTCTTCACTTGGT 15998 >seq13049 Length=11502 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| ||| |||| || |||||||||| ||| Sbjct 10310 ATGCAGATCTTCGTGAAGACCCTCACTGGTAAAACGATCACTCTCGAAGTCGAAGCCTCA 10369 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||| ||| ||| | |||||| |||||| |||||||| || || |||||||||||| Sbjct 10370 GACAGCATTGAGAACGTCAAAGCCAAGATTCAGGACAAAGAGGGAATCCCTCCCGATCAA 10429 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| || |||| | || ||| || ||||| || |||| | | | | | || || ||| Sbjct 10430 CAGCGATTGATCTTCGCCGGAAAACAACTTGAGGATGGCCGCACCCTGTCTGACTACAAC 10489 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| ||||| || Sbjct 10490 ATACAAAAGGAATCGAC 10506 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || || || | ||||| ||| |||| || |||||||||| || Sbjct 9850 CAACATGCAGATCTTCGTGAAGACCCTCACTGGTAAAACGATCACTCTCGAAGTCGAAGC 9909 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | |||| ||| ||| | |||||| || || ||||||||||| | ||||| || Sbjct 9910 CTCAGACAGCATTGAGAACGTCAAAGCTAAAATCCAGGACAAAGAAGGAACCCCTCCAGA 9969 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || || | || || | | ||||| ||||| ||||| | | | | | | ||| || Sbjct 9970 CCAGCAACGTCTTATCTTTGCTGGCAAACAACTTGAAGACGGCCGCACCTTGTCCGACTA 10029 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| ||||||||||| || |||| || || Sbjct 10030 CAACATCCAAAAAGAATCGACTCTTCACTTGGT 10062 >seq7750 Length=8304 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | |||||||| | |||||| |||| || || ||| Sbjct 2936 ATGCAAATCTTTGTGAAGACTCTTACTGGAAAGACCATTACCCTCGAGGTAGAAGCCTCT 2877 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || || ||||| ||||| ||||| || || || || ||| Sbjct 2876 GACACAATCGAGAACGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAA 2817 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | || ||| ||||| || ||||| | | | | || ||| || ||| Sbjct 2816 CAGCGTTTGATCTTCGCCGGAAAGCAGCTTGAAGACGGCCGTACTCTCTCCGACTACAAC 2757 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 ||||||||||| || || ||||| Sbjct 2756 ATTCAAAAAGAGTCAACTCTTCAT 2733 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || ||| | || |||||| | || || | || ||||| || Sbjct 994 AATGCAGATCTTCGTCAAGACACTCACCGGAAAAACCATCACTCTTGAGGTCGAAGCGTC 935 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| ||||| | ||||| ||||| ||||||||||| || ||||| ||||| Sbjct 934 CGACACAATCGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCA 875 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || | |||| | || ||| ||||| || ||||| | | | || ||| || || Sbjct 874 GCAACGCTTGATCTTCGCCGGAAAGCAGCTTGAAGACGGTCGTACTCTCTCCGACTACAA 815 Query 24170 CATTCAAAAAGAATCTACAATTCAT 24194 |||||| || || || || ||||| Sbjct 814 CATTCAGAAGGAGTCGACCCTTCAT 790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429861321729060