Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq257 203 2e-47 seq13049 104 2e-17 seq3364 98.7 7e-16 seq12388 95.1 8e-15 seq10049 86.0 4e-12 seq7750 82.4 5e-11 >seq257 Length=4770 Score = 203 bits (224), Expect = 2e-47 Identities = 217/287 (76%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 ||||||||||| || || ||| | |||||||||||||| ||||| || |||| || Sbjct 4038 AACGTAAATCGCAACGTCCTCGACCCCTTCTACCGCTACAAGATGCCTCGGATCTTGGCT 3979 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 ||||| ||||| || |||||||| || || || || || | ||| ||| ||||| || Sbjct 3978 AAGGTAGAGGGAAAAGGAAACGGAATCAAGACTGTGATCGCCAATATGGTCGAAGTTGCG 3919 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 ||| | |||| || || | || ||||| ||||| |||||||| ||||||||||| ||| Sbjct 3918 AAGTCTCTCGAGCGACCGCCTACTTACCCTACGAAGTATTTCGGATGCGAACTTGGAGCT 3859 Query 6354 CAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCC 6413 |||||| | | || |||| |||||||| | ||| || ||||| ||| | |||| Sbjct 3858 CAGACGAACATCGACAACAAGAACGAGCGATACATTGTCAACGGTGAGCACGATGCTGCG 3799 Query 6414 AAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTG 6460 ||||| ||||| | ||||||||||| || ||||||||||| || || Sbjct 3798 AAGCTCCAGGATATTCTTGACGGCTTCATCCGCAAGTTTGTTCTATG 3752 >seq13049 Length=11502 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||| |||||||| || ||||| || ||||| || ||| Sbjct 10080 CCACCACGGAGACGGAGGACCAAGTGAAGAGTCGATTCTTTTTGGATGTTGTAGTCGGAC 10021 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATC-GGAGGG 38209 || || |||| || | |||||| || ||||| || || ||||| || || |||||| Sbjct 10020 AAGGTGCGGCCGTCTTCAAGTTGTTTGCCAGCAAAGATAAGACGTTGCTGGTCTGGAGGG 9961 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | |||||||||||| ||||| || || |||| | | ||| ||| || Sbjct 9960 GTT-CCTTCTTTGTCCTGGATTTTAGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGAC 9902 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||| | || || |||||||| || | ||| |||||||| ||||||||||| Sbjct 9901 TTCGAGAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAGATCTGCATGTT 9851 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||| || ||||| |||||||| || ||||| |||||| Sbjct 10536 CCACCACGGAGACGGAGGACCAAGTGCAGAGTCGATTCCTTTTGTATGTTGTAGTCAGAC 10477 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | |||||||||||| || || | || |||||||||| ||| Sbjct 10476 AGGGTGCGGCCATCCTCAAGTTGTTTTCCGGCGAAGATCAATCGCTGTTGATCGGGAGGG 10417 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || ||||||||| ||| || || || |||| | | ||| ||| ||| Sbjct 10416 ATTCCCTCTTTGTCCTGAATCTTGGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGACT 10357 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || |||||||| || | ||| |||||||| ||||||||| Sbjct 10356 TCGAGAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAGATCTGCATG 10309 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | || | ||| || || |||||| || || |||||||||| Sbjct 7422 TACCACCACGAAGACGGAGAACGAGATGGAGTGTTGACTCCTTCTGGATGTTGTAATCAG 7363 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || | || || | |||||| || ||||| || || ||||| || || | | Sbjct 7362 AGAGGGTGCGGCCATCTTCAAGTTGTTTGCCAGCAAAGATAAGACGTTGCTGGTCTGGAG 7303 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||| ||||||||| ||||| ||| || || | | | ||| ||| | Sbjct 7302 GAATGCCCTCTTTGTCCTGGATTTTGGCCTTGACGTTTTCAATGCTGTCTGAGGCTTCGA 7243 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| | || || |||||||| || | ||| |||||||| ||||||||||| Sbjct 7242 CTTCGAGAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAGATCTGCATGTT 7191 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||| || || ||||||||||| | || | || || | || ||||| ||||| Sbjct 10273 CTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAA 10214 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || || ||||| || || | ||||| ||||| |||||| ||||| || || || Sbjct 10213 GATAAGACGTTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGGATTTTGGCTTTGACGTT 10154 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 || | | |||| ||| |||||||| ||||| || || || || | ||| || || Sbjct 10153 CTCAATACTATCAGAGGCTTCGACTTCTAAGGTAATTGTCTTGCCAGTAAGGGTCTTGAC 10094 Query 38306 GAATATCTGCATG 38318 || ||||||||| Sbjct 10093 AAAGATCTGCATG 10081 >seq3364 Length=7357 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| |||||||||||||||||||||||| |||||||| ||| Sbjct 4972 CTCTCTCTTCAAAGTACTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGATTCGT 4913 Query 20007 GGTAATATTTAGCCTTA 20023 || ||||||||| ||| Sbjct 4912 AGTCATATTTAGCTTTA 4896 >seq12388 Length=21549 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| |||||||| ||||| ||||||||||||||||||| || | || || Sbjct 15998 ACCAAGTGAAGAGTCGATTCCTTCTGAATATTGTAATCAGACAGGGTGCGGCCATCTTCA 15939 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | || |||||||| || || || || |||||||||| |||| || || |||||| Sbjct 15938 AGCTGCTTTCCGGCGAAGATGAGACGCTGTTGATCGGGAGGGATTCCCTCCTTGTCCTGG 15879 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| || || |||| | | ||| ||| ||||| | || || |||||| Sbjct 15878 ATTTTGGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGACTTCGAGGGTGATCGTTTTA 15819 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || ||||| || || || || || |||||| Sbjct 15818 CCAGTCAACGTCTTGACAAAAATTTGCATG 15789 >seq10049 Length=10599 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||| ||||||||||| || || | | ||| |||| || | || |||||||| || Sbjct 9207 CTCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCGTCTTCAAGCTGCTTTCCGGCGAA 9266 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || | || || || || | |||| ||||| |||||| || || ||| || || Sbjct 9267 GATCAATCGCTGCTGGTCTGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 9326 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 || | |||| ||| ||||| | || || |||||||| || | ||| ||||| Sbjct 9327 CTCAATGCTATCAGAGGCTTCGACTTCGAGAGTGATGGTTTTACCAGTGAGGGTCTTCAC 9386 Query 38306 GAATATCTGCATGTT 38320 ||| ||||||||||| Sbjct 9387 GAAGATCTGCATGTT 9401 >seq7750 Length=8304 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 || ||||| | | ||| | || | |||||| || |||||| ||||| ||||| || Sbjct 764 TTTCCACCACGAAGACGAAGAACGAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCG 823 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 || | | ||| |||| || | || |||||||| || || | |||||| ||||| | Sbjct 824 GAGAGAGTACGACCGTCTTCAAGCTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGA 883 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | |||||||||||| || || ||| ||||| | || || || ||| Sbjct 884 GGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCGATTGTGTCGGACGCTTCG 943 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | || || ||||| || || | || || ||||| |||||||| Sbjct 944 ACCTCAAGAGTGATGGTTTTTCCGGTGAGTGTCTTGACGAAGATCTGCAT 993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334889020927412