Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6327 149 8e-31 seq2468 132 6e-26 >seq6327 Length=14581 Score = 149 bits (164), Expect = 8e-31 Identities = 329/482 (68%), Gaps = 16/482 (3%) Strand=Plus/Minus Query 63221 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63280 ||||| || |||||||| | ||| | || || ||||| || |||| | ||| ||||| Sbjct 5941 TTGTTACCGCCCTGATCGACGTAACGTGCAGTATTATTGTACACTCGGAGCATAGGAATC 5882 Query 63281 ATACCATTGGATGTACCATTGGTCCCTGAGAT-ATAGCTTCCACTGGCACGAAT--ATTA 63337 | |||||| |||||||||||||| || | || || | ||||| || ||||| | | Sbjct 5881 AAACCATTCGATGTACCATTGGTTCCAGCAATCATTG-TTCCAGATGCGCGAATGCAATG 5823 Query 63338 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 63397 ||| ||| || || || ||||| || || || | || || | | || Sbjct 5822 TGCATT--TAGGCCAATACCACCTGCTGACTTTGAAATGAGGGCACACTGCCAAAGAGTC 5765 Query 63398 TCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGA---CAT 63453 | |||| || || || ||| || ||| || ||| ||||| || ||| ||| Sbjct 5764 TTGAAGATCCCATCAATTGAATCGTCATGCATCGTCAAG-AGAAAGCA---AGAGCTCAT 5709 Query 63454 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTC 63513 ||| | || |||||| ||||| || | || |||||||| ||||| ||||| || Sbjct 5708 TTGTGGTTTACAAGTTCCTGCATTGAAAAGTGTGGGAGAAGCATGAGTGAACCAGCGATC 5649 Query 63514 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTG 63572 || | | |||||| || || ||||| | || ||||| | ||| |||||||| || | Sbjct 5648 GGACATCAAATTGTAGGTTTCGATAGCGGCCTCGATATCTTCCTTG-TGAATTCCAACGG 5590 Query 63573 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGT 63632 |||||||||| | || || ||||| | ||||| | | | |||||| ||||| | Sbjct 5589 CGACACGCATAAGCAAATGTTGAGGACGCTCAACAACCCGTCCATCTATTTTTAACAAAT 5530 Query 63633 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 63692 | || ||||||||||| ||||| |||||| ||||||| || ||||| || || | || Sbjct 5529 ATGACCGCTCCAAAGTTTTGAAACCGAAATAGGTGTATGAGAAATCTCGGTCATACACAA 5470 Query 63693 TA 63694 || Sbjct 5469 TA 5468 Score = 143 bits (158), Expect = 3e-29 Identities = 336/503 (67%), Gaps = 17/503 (3%) Strand=Plus/Minus Query 62453 TTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTC 62512 |||||||||| |||| | ||||| | ||||| | ||||||||||| ||||| || Sbjct 7292 TTCTCAGCTAATTCAGAGGATGCCTCAAGAGCACCATGGTAAATGGTTTCAAAGATTCTC 7233 Query 62513 TTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCT 62572 || || ||||| | |||| | ||| || ||||| | | || || || ||| Sbjct 7232 TTGTTGAGATCACGAGCTTGAGGACTAGTGAACGGATACCGCATCAACATGAAAGCATCT 7173 Query 62573 GCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCT 62632 ||||| |||||||| || || || || || | ||| | ||| || || |||||||||| Sbjct 7172 GCTAAACCTTGAACTCCGATTCCAATTGGGCGATGACGCTTGTTTGATGTTTCAGCTTCG 7113 Query 62633 GGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT---TCTGACAATTACTTTG 62689 |||| ||||| |||| || |||||||| || || || | ||||| || ||| Sbjct 7112 GGAACCGGATAGAAATTGCAGTCGATAATTTTGTTAAGGTTACGTGTGACA---ACCTTG 7056 Query 62690 ACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTATTACAAACATGTTCAAT 62746 | | | || || ||||||| | | ||| | || || ||||| Sbjct 7055 GTAATTGCATGAAGCTTTTCGTAATCAAAAGTTTTGTCTTCTTTGACGAATCGGTTCAGA 6996 Query 62747 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62806 |||| || || | ||| ||||| || || |||| || | || || || | || || Sbjct 6995 GCAATCGAAGCTAAATTGCAAACAGCGACTTCATCAGGAGACGAGTACTGCACGATTTCC 6936 Query 62807 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 62866 || || ||||| |||||| || ||||| | ||||| ||||| |||| | || || Sbjct 6935 GTACAGAGATTGGAACACTTAATAGTTCCAAGATTTTTCTGATTCGACTTTCTATTGCAA 6876 Query 62867 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT- 62925 ||||| || ||||| ||| | || ||||||||||||| || | || ||| || ||| Sbjct 6875 GCATCTTTGTAAAGCATGTACGGTATACCAGTTTCAATTTGCG---CTGTAA-CGATTTC 6820 Query 62926 ---CCAGACGACTCGAGCCTTTA 62945 ||||| | | ||||| |||| Sbjct 6819 CTCCCAGAGGGCACGAGCTTTTA 6797 Score = 136 bits (150), Expect = 5e-27 Identities = 324/481 (67%), Gaps = 14/481 (3%) Strand=Plus/Minus Query 63221 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63280 ||||| || || ||||| | ||| | ||| || ||||| || |||| | ||| || || Sbjct 4561 TTGTTACCGCCTTGATCGACGTAACGAGCAGTATTATTGTACACTCGGAGCATAGGGATT 4502 Query 63281 ATACCATTGGATGTACCATTGGTCCCTGAGAT-ATAGCTTCCACTGGCACGAAT--ATTA 63337 | |||||| ||||| |||||||| || | ||| || | ||||| || ||||| | | Sbjct 4501 AAACCATTCGATGTTCCATTGGTTCCAGCGATCATTG-TTCCAGATGCGCGAATGCAATG 4443 Query 63338 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 63397 | ||| |||||| || || ||||| || || || | || || | | || Sbjct 4442 CGCATT--TAGACCAATACCACCTGCTGACTTCGAAATAAGGGCACACTGCCAGAGAGTT 4385 Query 63398 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA---CATT 63454 | || || || || || ||| || ||| | || || || || ||| |||| Sbjct 4384 TTGTAAATCCCATCAATTGAATCGTCATGCATCGTCAGGAGGAAGCA---AGAGCTCATT 4328 Query 63455 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCA 63514 || | | |||||| ||||| || | ||||||||||| ||||| ||||| || Sbjct 4327 TGTGGTTTGCAAGTTCCTGCATTGAAAAGTGTAGGAGAAGCATGAGTGAACCAGCGCTCG 4268 Query 63515 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGC 63573 || | | |||||| || || ||||| | || ||||| | ||| |||||||| || || Sbjct 4267 GACATCAAATTGTAGGTTTCGATAGCGGCATCGATATCTTCCTTG-TGAATTCCAACAGC 4209 Query 63574 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 63633 ||||||||| | || || ||||| | || || | || | ||||| ||||| || Sbjct 4208 GACACGCATAAGCAAATGTTGAGGACGCTCGACAACCTGTCCATCCATTTTTAACAAATA 4149 Query 63634 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 || ||||||||||| ||||| ||||| ||||||| || || || || || | ||| Sbjct 4148 TGACCGCTCCAAAGTTTTGAAACCGAAATATGTGTATGAGAAATCCCGGTCATACACAAT 4089 Query 63694 A 63694 | Sbjct 4088 A 4088 Score = 93.3 bits (102), Expect = 5e-14 Identities = 243/370 (66%), Gaps = 3/370 (1%) Strand=Plus/Minus Query 62579 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62638 |||||||| || || || || || | ||| | ||| || || |||||||||| |||| Sbjct 6677 CCTTGAACTCCGATTCCAATTGGGCGATGACGCTTGTTTGATCTTTCAGCTTCGGGAACC 6618 Query 62639 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62698 ||||| ||||| || ||||| || || || || | || || ||| | | Sbjct 6617 GGATAGTAATTGCAGTCAATAATCTTGTTAAGGTTACGTGTGATAACCTTGGTAATCGCA 6558 Query 62699 TTCAGTTTGAGAAAATCAAA---TCGCCCATCTATTACAAACATGTTCAATGCAACAGAT 62755 | || || ||||||| | | ||| | || | ||||| |||| || Sbjct 6557 TGAAGCTTTTCGTAATCAAAGGTTTTGTCTTCTTTGACGCATCGGTTCAGAGCAATCGAA 6498 Query 62756 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 62815 || | ||| ||||| || || |||| || | || || || | || |||||||| ||| Sbjct 6497 GCTAAATTGCAAACAGCGACTTCATCAGGAGACGAGTACTGCACGATTTCAGTGCAGAGA 6438 Query 62816 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 62875 || ||| || || ||||| | ||||| || || |||| | || || ||||| || Sbjct 6437 TTGGAACATTTAATAGTTCCAAGATTTTTCTGGTTCGACTTTCTATTGCAAGCATCTTTG 6378 Query 62876 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 62935 || || ||| | || |||||||||||||| || ||| | || | | ||| | | | Sbjct 6377 TAGAGCATGTAAGGTGTACCAGTTTCAATTTGCGATGTAACGATTTCCTCCCAAAGGGCA 6318 Query 62936 CGAGCCTTTA 62945 |||||||||| Sbjct 6317 CGAGCCTTTA 6308 Score = 86.0 bits (94), Expect = 8e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || |||||||| | | ||||||||| | ||||| || || || ||||| || | | Sbjct 6189 AGACCAGGACACTTGTGCGGACACATAAGAGACCAATCCTTATCTTCTTTCACGCGCTCC 6130 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || || | |||||||||||| | || ||| ||||| | | | | ||| || | Sbjct 6129 ATGAACAAATCAGGAATCCACAATGCATAAAACAGATCCCGAGCGCGCTCTTCTTCCGAT 6070 Query 63140 CCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63198 || ||||| || ||||| | |||||| | | |||||||| |||||| ||||| | ||| Sbjct 6069 CCAGTATTTTTCTTTAATCT-GAGGAATTCGAAAATATCAGCATGCCAAGGTTCAACGTA 6011 Query 63199 TATGGCCATAACTCCAGGCCG 63219 || || | | ||||||| || Sbjct 6010 AATAGCGAAAGCTCCAGGACG 5990 >seq2468 Length=4028 Score = 132 bits (146), Expect = 6e-26 Identities = 303/451 (67%), Gaps = 19/451 (4%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||||||||||||||||||| | || || || || |||| ||||| ||| ||| Sbjct 3101 ACATCAAACATGCGAAATCTCGATGGAGTCCTTCATCTCGTGAAATTAGTTCATTG---- 3156 Query 32713 ACGTGAGT----CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT 32768 |||||| || ||||| || |||||||| || | |||||| |||| ||||| ||| Sbjct 3157 CTGTGAGTCAACCCAGGCATGAGTCCACGCTTCTTCAACCAAAAAATGGCAGCAAACGAT 3216 Query 32769 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 32828 || || || || |||||||| || || ||||| || || | | |||| | || Sbjct 3217 CCGGAGAAAAAGATTCCTTCCACGGCAGCAAAAGCGATCACGCGAATTCCAAACGAAGCA 3276 Query 32829 CTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 32885 | | || | ||||| ||||||| ||||| ||||| || | || || | | Sbjct 3277 TTCTTATCTCCAATCCATCGGAGAGCCCAGTCGGCTTTCTTCTTAATGCAGGGAA---AC 3333 Query 32886 TCT---ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 32942 ||| |||||||||||||| ||| | ||| | ||| |||| |||| || ||| Sbjct 3334 TCTTGAATAGCATTAAAGAGCGTGTTCCTCTCAGTTAGATCGGTAACGTATGCTTCGATC 3393 Query 32943 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCAT 33002 | |||||| || |||||||| ||| | ||| || || || | |||||| | Sbjct 3394 ATCTTTGAATACATCTCGGAATGAATTCCTTCGACGGCAATCTGGAAACTGTAGAACGAG 3453 Query 33003 CTAGCCTCGGTAATCTGTACTT-CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 33061 || || | |||| |||| |||| |||||| || | | |||||| || || || Sbjct 3454 AGCGCTTCAGGCATCTTCACTTCCTGT-GTAAATCGCTCAACGAGATTTTCGTTTACGAT 3512 Query 33062 TCCGTCACTGGCTGCAAAAAACGCCAATACA 33092 ||| || || |||||||||||||| ||| Sbjct 3513 TCCATCTGAAGCAGCAAAAAACGCCAAAACA 3543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633519118459200