Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq12388 113 4e-20 seq8226 113 4e-20 seq7750 113 4e-20 seq10950 111 1e-19 seq13049 109 5e-19 seq10049 91.5 1e-13 >seq12388 Length=21549 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| |||||| | ||||| ||||||| || | || Sbjct 15790 ATGCAAATTTTTGTCAAGACGTTGACTGGTAAAACGATCACCCTCGAAGTCGAAGCCTCA 15849 Query 25059 GACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||| || ||| ||| |||| |||| || ||||| || || || || || || Sbjct 15850 GACAGCATTGAGAACGTCA---AAGCCAAAATCCAG-GACAAGGAGGGAATCCCTCCCGA 15905 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||||| | || || ||||| || || | ||||||| ||||| || ||||| Sbjct 15906 TCAACAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGCACCCTGTCTGATTA 15965 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||| || ||||| || || || || || || Sbjct 15966 CAATATTCAGAAGGAATCGACTCTTCACTTGGTTCT 16001 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| | || |||||| | ||||| | ||||| || | ||| Sbjct 15281 ATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACGATCACCCTAGAAGTCGAAGCCTCT 15340 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | ||| || | ||| |||||| ||||| ||||| ||||| || ||||| Sbjct 15341 GATAGTATTGAAAACGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCTCCAGACCAG 15400 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || |||| || ||||| || || | ||||||| ||||| | || |||||| Sbjct 15401 CAACGTCTTATCTTCGCCGGGAAGCAGCTTGAAGATGGCCGCACCCTATCTGACTACAAT 15460 Query 25179 ATTCAAAAAGAATCCACGCTACAT 25202 ||||| || || || || || ||| Sbjct 15461 ATTCAGAAGGAGTCAACCCTCCAT 15484 >seq8226 Length=1064 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| |||||| | ||||| ||||||| || | ||| Sbjct 1012 ATGCAAATCTTTGTCAAGACGTTGACTGGTAAAACAATCACTCTCGAAGTCGAAGCCTCT 953 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || | || || |||| | || || | ||| ||||| || || ||||| || || Sbjct 952 GATAGCATTGAAAACGTCA---AGGCCAAGATTCAG-GACAAGGAGGGCATTCCCCCAGA 897 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || || ||||| ||||| || ||||||| ||||| | ||||| Sbjct 896 CCAGCAGCGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGCCGCACCCTTTCTGATTA 837 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||| || || || || || ||| | || || Sbjct 836 CAATATTCAGAAGGAGTCAACCCTCCATCTCGTTCT 801 >seq7750 Length=8304 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||| | || || || |||| || |||| || || | ||| Sbjct 2936 ATGCAAATCTTTGTGAAGACTCTTACTGGAAAGACCATTACCCTCGAGGTAGAAGCCTCT 2877 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| ||||| ||||| || |||||| Sbjct 2876 GACACAATCGAGAACGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAA 2817 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||| || || | ||||| | || ||| | ||| ||||| Sbjct 2816 CAGCGTTTGATCTTCGCCGGAAAGCAGCTTGAAGACGGCCGTACTCTCTCCGACTACAAC 2757 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||||| || || || ||| | || || Sbjct 2756 ATTCAAAAAGAGTCAACTCTTCATCTTGTTCT 2725 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| | ||||| || | ||||| | ||||| || | || Sbjct 1724 AATGCAGATCTTCGTTAAGACCCTCACCGGAAAGACAATCACTCTGGAAGTTGAAGCATC 1665 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||||||| | ||| || ||| || || ||||| ||||| || || || Sbjct 1664 CGACACTATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCGCCAGATCA 1605 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || ||||| || ||| | || || | ||| || | ||||||||| Sbjct 1604 GCAGCGCTTGATCTTCGCCGGAAAGCAACTCGAGGACGGTCGTACACTCTCCGATTACAA 1545 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| || || ||||| | ||||| || || | || | ||||||| Sbjct 1544 CATTCAGAAGGAGTCCACCTTGCATTTGGTTCTGCGTCTCCGTGGAGGAA 1495 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| | ||||| ||| ||||||| | || || || |||| Sbjct 994 AATGCAGATCTTCGTCAAGACACTCACCGGAAAAACCATCACTCTTGAGGTCGAAGCGTC 935 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | ||| || ||| ||||||||||| ||||| || || || Sbjct 934 CGACACAATCGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCA 875 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || || ||||| || || | ||||| | ||| ||| | ||| ||||| Sbjct 874 GCAACGCTTGATCTTCGCCGGAAAGCAGCTTGAAGACGGTCGTACTCTCTCCGACTACAA 815 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAA 25228 ||||| || || || || || ||| | || || | || | || ||||| Sbjct 814 CATTCAGAAGGAGTCGACCCTTCATCTCGTTCTTCGTCTTCGTGGTGGAAA 764 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || ||||| ||||||||||| || |||| || | || || || |||| Sbjct 1496 AATGCAGATCTTCGTAAAAACTTTGACCGGAAAGACCATTACCCTTGAGGTCGAAGCGTC 1437 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| ||||| | ||| |||||| ||||| ||||| ||||| || ||||| Sbjct 1436 TGACACAATCGAAAATGTCAAGGCCAAAATCCAGGACAAGGAAGGAATTCCCCCAGACCA 1377 Query 25118 ACAGCGGATTATTTTTGCCGGCAA 25141 |||||| | || || ||||| || Sbjct 1376 ACAGCGCTTGATCTTCGCCGGTAA 1353 >seq10950 Length=25243 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| |||||||||||||| ||| ||||||| ||||||| || ||| Sbjct 24757 AATGCAAATCTTTGTCAAGACTTTGACCGGAAAAACCATCACCCTCGAAGTCGAAGGGTC 24698 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | ||| |||||| || |||||||| || || || ||||| Sbjct 24697 AGACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAAGAAGGAATCCCTCCAGACCA 24638 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAAT 25146 ||| || ||||||| ||||| | ||||| Sbjct 24637 ACAACGCCTTATTTTCGCCGGTATACAAT 24609 >seq13049 Length=11502 Score = 109 bits (120), Expect = 5e-19 Identities = 155/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || |||||| | ||||| ||||||| || | || Sbjct 9854 ATGCAGATCTTCGTGAAGACCCTCACTGGTAAAACGATCACTCTCGAAGTCGAAGCCTCA 9913 Query 25059 GACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||| || ||| ||| |||| |||| || ||||||||||| | || || || Sbjct 9914 GACAGCATTGAGAACGTCA---AAGCTAAAATCCAG-GACAAAGAAGGAACCCCTCCAGA 9969 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || || |||| ||||| ||||||||| | ||||| | ||||| || ||| || Sbjct 9970 CCAGCAACGTCTTATCTTTGCTGGCAAACAACTTGAAGACGGCCGCACCTTGTCCGACTA 10029 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || ||||||||||| || || || || || || Sbjct 10030 CAACATCCAAAAAGAATCGACTCTTCACTTGGTCCT 10065 >seq10049 Length=10599 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || |||||| ||||||| ||||||| || | ||| Sbjct 9398 ATGCAGATCTTCGTGAAGACCCTCACTGGTAAAACCATCACTCTCGAAGTCGAAGCCTCT 9339 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | || ||| | ||| || ||| ||||| ||||| || || || ||||| Sbjct 9338 GATAGCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCGCCAGACCAG 9279 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||| || || | ||||| | ||| ||| | ||| |||||| Sbjct 9278 CAGCGATTGATCTTCGCCGGAAAGCAGCTTGAAGACGGTCGTACTCTTTCCGACTACAAT 9219 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 ||||| || || || || || || Sbjct 9218 ATTCAGAAGGAGTCAACCCTCCA 9196 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142 |||||| || || || || || || || ||||| ||||| | || ||||| |||||| Sbjct 8534 AAAATCCAAGATAAGGACGGAATCCCGCCAGACCAGCAGCGATTGATCTTTGCTGGCAAA 8475 Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202 ||| | ||||||| ||||| || || |||||||| || ||||||||||| || ||| Sbjct 8474 CAACTTGAAGATGGCCGCACCCTGTCTGACTACAATATCCAGAAAGAATCCACCCTCCAT 8415 Query 25203 TTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 | || || | || | || ||||| || Sbjct 8414 CTTGTTCTCCGTCTTCGTGGCGGAAACTA 8386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433252732551380