Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2527 232 7e-56 seq2468 197 2e-45 >seq2527 Length=10055 Score = 232 bits (256), Expect = 7e-56 Identities = 422/609 (69%), Gaps = 14/609 (2%) Strand=Plus/Minus Query 92918 AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 ||||| |||||| ||| |||| || || || ||||| | ||||||||| || | Sbjct 5740 AATAAGTGATCAGCAACATATTCAATATATTGCGACATGAGTCGACAATTCATACCAATC 5681 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 | | || || ||||| ||||| | | || | |||||| ||| ||||| | Sbjct 5680 ATATCCACTGGAAGAGCTTCGGTTAGATACTCCTGTTCGATTTGAACAGCTTCACGTATA 5621 Query 93038 ATTTCTATTACTCTACTATT-TGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096 ||||| ||| | || || || |||||||||| ||| ||| ||||||| || ||||| Sbjct 5620 ATTTCACACACT-TGCTCTTCTGTTGGTTTTTGTTCGAGATACTTGTACACCAAACACGC 5562 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG 93156 ||| || ||| | ||||| |||| ||| || ||||| || ||| ||| ||||| || Sbjct 5561 AAAATCTCGATGGAGTCCTTCATCTCTTGAAATTAACTCGTTACTGTGTGTCAAACCCGG 5502 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | ||||| |||||||| |||||||| |||| |||||| ||||| ||||| || || Sbjct 5501 CATAAGTCCACGTTTCTTCAGCCAAAAAATTGCAGCAAACGAGCCAGAGAAAAAGATTCC 5442 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 |||||| || |||||||| |||| ||| |||| || ||| | ||||| Sbjct 5441 TTCCACTGCAGCAAATGCAACAACACGCATCCCAAATGAAGCATTCTTATTTTCAATCCA 5382 Query 93277 TTTTAAAGCCCAATCGGCTTT-TTTCTTA-ATAC--AAGGTAGTGTTTCGATAGCGTTAA 93332 || | | |||||| ||||| ||| ||| |||| || || ||| || ||||| | Sbjct 5381 TTGAATTGTCCAATCTGCTTTCTTTTTTATATACGGAAAGTCGTGA----ATTGCGTTGA 5326 Query 93333 ATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTT 93392 | || || | | ||| | | ||| ||||| || ||||| || |||||||||| Sbjct 5325 AGAGTGTATTTTGTTCGACTGGATCGTTAATGTACGTTTCGATCAATTTCGAATACATTT 5266 Query 93393 CAGAATGGACATTC--TCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 |||| || | ||| |||| |||||| || || ||||||| | || || | || Sbjct 5265 CAGAGTGAA--TTCCTTCCACTGCAATCTGAAAATTGTAGAAAGAGAGTGCCTCAGGCAT 5208 Query 93451 CTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGC 93510 || ||||||||| | ||| | | | |||||||||||| || || ||||| || ||||| Sbjct 5207 CTTCACTTCTTGTGTAAAACGTCCAATGAGATTTTCATTTACGATTCCATCTGAAGCTGC 5148 Query 93511 aaaaaaaGC 93519 |||||| || Sbjct 5147 AAAAAATGC 5139 >seq2468 Length=4028 Score = 197 bits (218), Expect = 2e-45 Identities = 458/676 (68%), Gaps = 16/676 (2%) Strand=Plus/Plus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAA-GACGTA 92984 |||||| ||| |||| ||||||| ||||| | | |||||||||| || | | | || | Sbjct 2943 ATCAGCAACATATTCGATGTACTTGGACATGAGAACACAATTCATACCGATCATGTCG-A 3001 Query 92985 CAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044 |||| || | ||||| | | | |||| ||| || || ||||| | |||||| Sbjct 3002 CAGGAAGGGACTCGGTGAGGTATTCTTGCTCTATATGCACAGCTTCCCGTATGATTTCAT 3061 Query 93045 TTACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCG 93103 ||| | || ||| | || || || | | || |||||||| || || || || || Sbjct 3062 ACACT-TGCTCGTTGCTAGGCTTCTGGTCAAGGTATTTGTACATCAAACATGCGAAATCT 3120 Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGT 93163 ||| | ||||| |||||||| || | ||||||||| || || || || | ||| Sbjct 3121 CGATGGAGTCCTTCATCTCGTGAAATTAGTTCATTGCTGTGAGTCAACCCAGGCATGAGT 3180 Query 93164 CCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACG 93223 || || ||||| | |||||| || | |||||| || || ||||| || ||||||||| Sbjct 3181 CCACGCTTCTTCAACCAAAAAATGGCAGCAAACGATCCGGAGAAAAAGATTCCTTCCACG 3240 Query 93224 GCTGCAAATGCCACAATACG--TTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTA 93281 || ||||| || | | || ||| |||| || ||| | |||||| | Sbjct 3241 GCAGCAAAAGCGATCACGCGAATTC--CAAACGAAGCATTCTTATCTCCAATCCATCGGA 3298 Query 93282 AAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG-GTAA 93340 |||||| |||||||| |||||||| || || | || ||||| ||||| || || Sbjct 3299 GAGCCCAGTCGGCTTTCTTCTTAATGCAGGGAAACTCTTGAATAGCATTAAAGAGCGTGT 3358 Query 93341 TCTCGCTC-GTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399 || | ||| || | ||| | ||||| ||||| | | |||||||| || ||||| Sbjct 3359 TC-CTCTCAGTTAG-ATCGGTAACGTATGCTTCGATCATCTTTGAATACATCTCGGAATG 3416 Query 93400 GACATTC--TCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACT 93457 |||| || | ||||| ||||| | |||||| | ||||| | |||| |||| Sbjct 3417 --AATTCCTTCGACGGCAATCTGGAAACTGTAGAACGAGAGCGCTTCAGGCATCTTCACT 3474 Query 93458 TCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaa 93517 || || | ||||| ||| ||||||||||| || || || ||||| || || |||||||| Sbjct 3475 TCCTGTGTAAATCGCTCAACGAGATTTTCGTTTACGATTCCATCTGAAGCAGCAAAAAAC 3534 Query 93518 GCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGA 93577 ||||| | | | ||||| | ||||||| |||| || | ||| | | ||| Sbjct 3535 GCCAAAACACGGGAAATAAAGAACTGCTCATCAGTGGTAAGGTTGTGCCAGTGCGCCAGA 3594 Query 93578 TCTTTTGAAAGATCGA 93593 |||||| ||||||| Sbjct 3595 TCTTTTCCTAGATCGA 3610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556761595248480