Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq13049 120 3e-22 seq12388 118 9e-22 seq7750 104 2e-17 seq8226 102 7e-17 >seq13049 Length=11502 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| | ||| | || || || || || ||||||||||| Sbjct 7423 ATACCACCACGAAGACGGAGAACGAGATGGAGTGTTGACTCCTTCTGGATGTTGTAATCA 7364 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||||||||||||| ||||| |||| ||||| || ||||| ||| Sbjct 7363 GAGAGGGTGCGGCCATCTTCAAGTTGTTTGCCAGCAAAGATAAGACGTTGCTGGTCTGGA 7304 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| |||||||| || || || | | ||||| | |||| | || |||| Sbjct 7303 GGAATGCCCTCTTTGTCCTGGATTTTGGCCTTGACGTTTTCAATGCTGTCTGAGGCTTCG 7244 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | |||||| || || || || || || || ||||||||| Sbjct 7243 ACTTCGAGAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAGATCTGCATG 7193 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | || ||||||||||| |||||||| ||| Sbjct 10083 ATGCCACCACGGAGACGGAGGACCAAGTGAAGAGTCGATTCTTTTTGGATGTTGTAGTCG 10024 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||||||||||| ||||| |||| ||||| || ||||| ||| Sbjct 10023 GACAAGGTGCGGCCGTCTTCAAGTTGTTTGCCAGCAAAGATAAGACGTTGCTGGTCTGGA 9964 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || | ||||||||||| || || ||| | | |||| | |||| | || |||| Sbjct 9963 GGGGTTCCTTCTTTGTCCTGGATTTTAGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCG 9904 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | |||||| || || || || || || || ||||||||| Sbjct 9903 ACTTCGAGAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAGATCTGCATG 9853 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | || ||||| ||||| |||||||| || Sbjct 10539 ATGCCACCACGGAGACGGAGGACCAAGTGCAGAGTCGATTCCTTTTGTATGTTGTAGTCA 10480 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| ||||||||||| || ||| |||| | |||||||| || ||| Sbjct 10479 GACAGGGTGCGGCCATCCTCAAGTTGTTTTCCGGCGAAGATCAATCGCTGTTGATCGGGA 10420 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || |||||||| |||||| ||| | | |||| | |||| | || |||| Sbjct 10419 GGGATTCCCTCTTTGTCCTGAATCTTGGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCG 10360 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | |||||| || || || || || || || ||||||||| Sbjct 10359 ACTTCGAGAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAGATCTGCATG 10309 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| | ||| | || || || || || ||||||||||| Sbjct 10311 ATGCCACCACGAAGACGGAGAACGAGATGGAGTGTTGACTCCTTCTGGATGTTGTAATCA 10252 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||||||| || || ||||| |||| ||||| || ||||| || Sbjct 10251 GAGAGGGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAAGATAAGACGTTGCTGGTCTGGG 10192 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| || || ||| | | |||| | || | || |||| Sbjct 10191 GGGATTCCTTCCTTGTCCTGGATTTTGGCTTTGACGTTCTCAATACTATCAGAGGCTTCG 10132 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || ||||| || || || || ||||| ||||||||| Sbjct 10131 ACTTCTAAGGTAATTGTCTTGCCAGTAAGGGTCTTGACAAAGATCTGCATG 10081 >seq12388 Length=21549 Score = 118 bits (130), Expect = 9e-22 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 114159 CCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATA 114218 ||||| || | | ||| || || | || ||||| || ||||| |||||||| || Sbjct 16013 CCACGGAGACGGAGAACCAAGTGAAGAGTCGATTCCTTCTGAATATTGTAATCAGACAGG 15954 Query 114219 GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATG 114278 || || ||||||||| || || || ||| |||||||||||||||| || ||||| || Sbjct 15953 GTGCGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGTTGATCGGGAGGGATT 15894 Query 114279 CCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCC 114338 || || ||||| || || ||| | | |||| | |||| | || |||||| || Sbjct 15893 CCCTCCTTGTCCTGGATTTTGGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGACTTCG 15834 Query 114339 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 | ||| | |||||| || |||| || || |||||||| |||||| Sbjct 15833 AGGGTGATCGTTTTACCAGTCAACGTCTTGACAAAAATTTGCATG 15789 >seq7750 Length=8304 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | | ||| | ||| | || || || || ||||||||||| ||| Sbjct 767 CCACCACGAAGACGAAGAACGAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAG 826 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||||||| |||||||| || || || ||| |||| | || || || || |||||| Sbjct 827 AGAGTACGACCGTCTTCAAGCTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGAGGA 886 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||||||||| ||||| || | | ||| | ||||||| | |||||| Sbjct 887 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCGATTGTGTCGGACGCTTCGACC 946 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | ||||| ||||| || || || || || |||||||| Sbjct 947 TCAAGAGTGATGGTTTTTCCGGTGAGTGTCTTGACGAAGATCTGCAT 993 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| | ||| | || || ||||||||||||||||| ||| | |||||| ||||| Sbjct 2727 AACAAGATGAAGAGTTGACTCTTTTTGAATGTTGTAGTCGGAGAGAGTACGGCCGTCTTC 2786 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||| || || || ||| |||| | |||||||||||| || ||||| ||||| ||||| Sbjct 2787 AAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTG 2846 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| || | | || | ||||| | || ||| || || | ||| | || || Sbjct 2847 GATCTTGGCCTTAACGTTCTCGATTGTGTCAGAGGCTTCTACCTCGAGGGTAATGGTCTT 2906 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || ||||| || ||||| || ||||| Sbjct 2907 TCCAGTAAGAGTCTTCACAAAGATTTGCAT 2936 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || ||| ||||| | || || || || ||||||||||||||| Sbjct 1494 ATTCCTCCACGGAGACGCAGAACCAAATGCAAGGTGGACTCCTTCTGAATGTTGTAATCG 1553 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| || || ||||| || || ||| |||| | ||||| || || || Sbjct 1554 GAGAGTGTACGACCGTCCTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGC 1613 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || ||||| || | | || | ||||||| | ||| Sbjct 1614 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGATGCTTCA 1673 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || ||||| || || || || || |||||||| Sbjct 1674 ACTTCCAGAGTGATTGTCTTTCCGGTGAGGGTCTTAACGAAGATCTGCAT 1723 >seq8226 Length=1064 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || ||||||||||| |||||| |||| | ||||| ||||| ||||| || ||||| ||| Sbjct 630 TCCTCAAGTTGTTTTCCAGCGAAGATCAATCGCTGCTGGTCTGGAGGGATACCTTCCTTG 689 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || |||||| || | | ||||| | |||| | || |||||| || | ||| | Sbjct 690 TCTTGAATCTTGGCCTTGACATTTTCAATGCTGTCTGAGGCTTCGACTTCTAAGGTAATT 749 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || ||||| || || || || |||||||| |||||| Sbjct 750 GTCTTGCCAGTAAGGGTCTTGACAAAAATTTGCATG 785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420061424230224