Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_009234.1 Length=35741 Score E Sequences producing significant alignments: (Bits) Value seq4423 134 3e-27 seq11062 91.5 3e-14 seq10415 82.4 2e-11 >seq4423 Length=667 Score = 134 bits (148), Expect = 3e-27 Identities = 149/197 (76%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 3414 TCCTGGGGACGAACGCGCGTACCGCGCAGTCGTATCACGGCAACTTCTATTTCGACGAAT 3473 |||||||||| ||||| || ||||| ||| ||||||||||||||||| |||||||||| Sbjct 1 TCCTGGGGACCAACGCCCGGACCGCCCAGGGCTATCACGGCAACTTCTACTTCGACGAAT 60 Query 3474 ACTTTTGG--GTTCCGAAGTTCCGCGAGTTGAACAAGGTTGCGTCGGGCATGGCGATGCA 3531 ||| ||| ||| |||||| || | |||||||| || |||||||||||||| Sbjct 61 TCTTCTGGACCTTC--AAGTTCAAGGAACTCAACAAGGTCGCCAGCGGCATGGCGATGCA 118 Query 3532 CAAGCGCTGGCGCAAGACCTACTTCAGCACGCCGTCGAGTGTCACGCACGAGGCGTTCGC 3591 |||| | ||| |||||||||| ||||| ||||| | | |||||||| | | | Sbjct 119 GAAGCAGTACCGCCGGACCTACTTCTCGACGCCATCGAGCATGGCACACGAGGCCTACAC 178 Query 3592 GTTCTGGAGCGGCGCGC 3608 ||||||| ||||| || Sbjct 179 CTTCTGGACCGGCGAGC 195 Score = 107 bits (118), Expect = 4e-19 Identities = 161/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 3740 GGCTGCAACCTGTTCGACATCGACGAGCTGCGCCGCGAATACAGCGCCGAGGAATTCGCG 3799 ||||| | ||||||||| | ||||||||| | | || ||| |||||||| ||| | Sbjct 393 GGCTGTGATCTGTTCGACCTGGACGAGCTGAGGCTTGAGTACGACGCCGAGGCCTTCCAG 452 Query 3800 AACCTGCTGATGTGCCACTTCATCGACGATTCGCTGTCGGTGTTCAAGCTGTCGGACCTG 3859 ||||||||||||||||| ||||||||||| | | | ||| ||| || || Sbjct 453 AACCTGCTGATGTGCCAGTTCATCGACGACGGGGCGAGCATCTTCCCCCTGGCGATGTTG 512 Query 3860 CAACGCTGCATGGTCGACTCGTGGGAGGAATGGGCGGACGACTTTTCGCCGCT-GCTGCT 3918 || | ||||||||| ||| ||||| ||||| || |||| || | || || Sbjct 513 CAGCCCTGCATGGTGGACAGTTGGGACCTCTGGGCAGAGGACTACAAACCCTTCGCCGC- 571 Query 3919 GCGTCCGTTCGGTCATCGCGAGGTGTGGGTCGGCTACGATCCGGCG 3964 || ||||||||| ||||| |||| ||||| ||||| || |||||| Sbjct 572 ACGGCCGTTCGGTGATCGCCAGGTCTGGGTGGGCTATGACCCGGCG 617 >seq11062 Length=2017 Score = 91.5 bits (100), Expect = 3e-14 Identities = 155/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 23932 AGTCCGGCCAGATCACCATGATTTCGCGTTGGCCGAACTGCCTGCGGTACGCGGCGGCTT 23991 |||| |||||||||||||| ||| ||| ||||| | | |||||| ||| |||||| Sbjct 80 AGTCAGGCCAGATCACCATTGCTTCTCGTGCACCGAAGTTCTCGCGGTAGGCGACGGCTT 139 Query 23992 CTTCCTTCGTCTTGCAG--CCGGACGCCGACACATAGGCCATCGCGCGCAGCGACTGCGC 24049 | || || ||||||| | || | ||| | |||||| | || |||| | ||| | Sbjct 140 CCTCTTTGGTCTTGCTGTCCCAGGCGCTG--ACATAGCAGAAGGCCCGCAACTGCTGGCC 197 Query 24050 GGTCGCCGCGAGCGCGGCCGCGACCGGCTGCGTATCGAGGCCGGGCGCGGCGAGAATGCG 24109 | ||| | || |||| || |||||| | | |||||||| ||| || | |||||||| Sbjct 198 GATCGAGACCAGGGCGGTGGCTACCGGCAGGCTGTCGAGGCCTGGCACGCCAAGAATGCG 257 Query 24110 CGGCTTCACGCCGA-GCGCACCCTGCGCGGCGAGCAGCGC 24148 |||| || |||| || || || |||||||| || || Sbjct 258 CGGCACCAAACCGACACGGGCCTTG-GCGGCGAGGAGGGC 296 >seq10415 Length=2169 Score = 82.4 bits (90), Expect = 2e-11 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 729 GATGTTTTCGGCCA-CGCAGCCGCAGCCGAAGTCTTCGACCACGTAGGCGTCGTTCGACG 787 |||||||||||||| |||| ||||||| | |||||||| ||| ||| || || || Sbjct 13 GATGTTTTCGGCCATGGCAG-CGCAGCCCAGGTCTTCGATCACATAGCTTTCATTGACCG 71 Query 788 ATTCGTAGTTCTCGATGCGGTCGCGTT 814 ||||| ||||||||||||||||||||| Sbjct 72 ATTCGAAGTTCTCGATGCGGTCGCGTT 98 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114230264112072