Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_009235.2 Length=48674 Score E Sequences producing significant alignments: (Bits) Value seq9889 86.0 2e-12 seq8086 84.2 7e-12 >seq9889 Length=1737 Score = 86.0 bits (94), Expect = 2e-12 Identities = 220/331 (66%), Gaps = 13/331 (4%) Strand=Plus/Plus Query 1694 CGGCATTACTTCTGCGTGGCGCCTCGATTCTGGGTGCCGGAAGACACCGTGCGCA----- 1748 || |||| || | | | || || || |||||||||||| | ||||| || || Sbjct 288 CGCCATTTCTACAGTATTGCCCCGCGGTTCTGGGTGCCGTATGACACGGTCTACAGCGTT 347 Query 1749 ----ATACCGAAAACCGTCGTATGGCCGAGCGCTATCAGGCGTGGGTCAACCACGGCT-T 1803 | | |||||| || || | |||||||| | ||| ||||| | | || | | Sbjct 348 GAGCAGAACGAAAATCGGCGCAGTGCCGAGCGTTTCCAGAAATGGGTGG-CAATGGATCT 406 Query 1804 CCTGATCGAAACGGATGGCGCGGAGATCGACTATCGCGAGATTCTGGAAGAAGCCAAGGA 1863 |||| || ||||| ||||| || |||| || ||| | || || ||||||||||| Sbjct 407 GCTGACCGTCACGGAAGGCGCTGAAGTCGATTACCGCTACATCCTTGAAGAAGCCAAACT 466 Query 1864 AGCCAACCGGCGGTGCCCGGTTCAATGCA-CGCCGCTCGATCCGCATGGTGCGACGAACC 1922 ||| || | | |||||| ||||| | ||||| | ||||| || |||||| Sbjct 467 GGCCTGCCACCTGAACCCGGT-CAATGAAGCGCCGATTGATCCCTTCGGGGCGACGGGAT 525 Query 1923 TGTCGCACCAGCTCGCGGACGAGGGCCTGACGCCGGTCACGATCGTGCAGAACTACACGA 1982 |||| || | | ||||| || ||| | | ||| ||| || ||||||| || Sbjct 526 TGTCCCATGCGTTGGCGGATGAAGGCATTAACCCGATCATCATTACCCAGAACTTTACCC 585 Query 1983 ACATGTCGGACCCGATGAAGGAGCTCGAAGC 2013 ||||| ||||||||||||||||| ||||| Sbjct 586 ACATGAGCGACCCGATGAAGGAGCTGGAAGC 616 Score = 84.2 bits (92), Expect = 7e-12 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 1558 CTGGAAGGCGTGCGAGGACCGATCGTTGTCGCTCGAGCAGTTCGAGGGACAGGACTGCGT 1617 |||||| |||||| ||| ||| || | || || |||||||||||||| ||| Sbjct 82 CTGGAAACAGTGCGAAGACACGTCGCTGACACTGGAACAGTTCGAGGGACAACCCTGTTA 141 Query 1618 GCTGGCGCTGGACATGGCGCGCAAGCTAGACTTGAACAGCATGGCGCGGCTTTT 1671 |||||| | ||| |||| || ||||| ||| ||||||||||||| |||||||| Sbjct 142 TCTGGCGTTTGACCTGGCCCGTAAGCTGGACATGAACAGCATGGCCCGGCTTTT 195 >seq8086 Length=1658 Score = 84.2 bits (92), Expect = 7e-12 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 41283 ACCAAATCCGCTGTACCGGCAAGGCATGTCGCGCGTTGGCTGCATGCCATGCATCAAC-G 41341 |||||| || || || ||||| ||| ||||| || |||||||| ||||||||| | Sbjct 246 ACCAAACCCACTCTATTCACAAGGAATGGGCCGCGTCGGGTGCATGCCCTGCATCAACTG 187 Query 41342 CCGGGAAGTTGGAACTGCGAGAGATCGCGCGCCGGTTTCCCGAGCACGTCGAGCGCATTG 41401 ||| ||| | |||||||||||||||||| |||||| ||||| || || ||||||| Sbjct 186 CCGCAAAGACG-AACTGCGAGAGATCGCGCTCCGGTTCCCCGAAGTGGTTGACCGCATTG 128 Query 41402 CGGAATGGGAGCG 41414 |||||||| Sbjct 127 ACCGCTGGGAGCG 115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155608859909664