Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq4423 152 1e-32 seq11062 87.8 4e-13 seq10415 80.6 6e-11 >seq4423 Length=667 Score = 152 bits (168), Expect = 1e-32 Identities = 153/197 (78%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 3469 TCCTGGGGACGAACGCGCGCACCGCGCAGTCGTACCACGGCAACTTCTACTTCGACGAAT 3528 |||||||||| ||||| || ||||| ||| || ||||||||||||||||||||||||| Sbjct 1 TCCTGGGGACCAACGCCCGGACCGCCCAGGGCTATCACGGCAACTTCTACTTCGACGAAT 60 Query 3529 ACTTTTGG--GTTCCGAAGTTCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGCGATGCA 3586 ||| ||| ||| |||||| || || |||||||||||| ||||||||||||||| Sbjct 61 TCTTCTGGACCTTC--AAGTTCAAGGAACTCAACAAGGTCGCCAGCGGCATGGCGATGCA 118 Query 3587 CAAGCGCTGGCGCAAGACTTACTTCAGCACGCCGTCCAGCGTCACGCACGAGGCGTACGC 3646 |||| | ||| ||| |||||| ||||| || ||| | | |||||||| ||| | Sbjct 119 GAAGCAGTACCGCCGGACCTACTTCTCGACGCCATCGAGCATGGCACACGAGGCCTACAC 178 Query 3647 GTTCTGGAGCGGCGCGC 3663 ||||||| ||||| || Sbjct 179 CTTCTGGACCGGCGAGC 195 Score = 95.1 bits (104), Expect = 3e-15 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 3795 GGCTGCGACCTGTTCGACATCGACGAGCTGCGCCGCGAGTACAGCGCCGAGGAATTCGCG 3854 ||||| || ||||||||| | ||||||||| | | |||||| |||||||| ||| | Sbjct 393 GGCTGTGATCTGTTCGACCTGGACGAGCTGAGGCTTGAGTACGACGCCGAGGCCTTCCAG 452 Query 3855 AATCTGCTCATGTGCCAGTTCATCGACGATTCGCTGTCGGTGTTCAAGCTGTCGGACCTG 3914 || ||||| |||||||||||||||||||| | | | ||| ||| || || Sbjct 453 AACCTGCTGATGTGCCAGTTCATCGACGACGGGGCGAGCATCTTCCCCCTGGCGATGTTG 512 Query 3915 CAACGCTGCATGGTCGACTCGTGGGAAGAATGGGCGGACGACTTCTCGCNNNNNNNNNNN 3974 || | ||||||||| ||| ||||| ||||| || |||| | | Sbjct 513 CAGCCCTGCATGGTGGACAGTTGGGACCTCTGGGCAGAGGACTACAAACCCTTCGCCGCA 572 Query 3975 NNNNCGTTCGGCTATCGCGAGGTGTGGGTCGGCTACGATCCGGCG 4019 ||||||| ||||| |||| ||||| ||||| || |||||| Sbjct 573 CGGCCGTTCGGTGATCGCCAGGTCTGGGTGGGCTATGACCCGGCG 617 >seq11062 Length=2017 Score = 87.8 bits (96), Expect = 4e-13 Identities = 154/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 24936 AGTCCGGCCAGATCACCATGATTTCGCGTTGGCCGAACTGCTTGCGGTACGCGGCGGCTT 24995 |||| |||||||||||||| ||| ||| ||||| | || |||||| ||| |||||| Sbjct 80 AGTCAGGCCAGATCACCATTGCTTCTCGTGCACCGAAGTTCTCGCGGTAGGCGACGGCTT 139 Query 24996 CTTCCTTCGTTTTGCAG--CCGGACGCCGACACATAGGCCATCGCGCGCAGCGACTGCGC 25053 | || || || |||| | || | ||| | |||||| | || |||| | ||| | Sbjct 140 CCTCTTTGGTCTTGCTGTCCCAGGCGCTG--ACATAGCAGAAGGCCCGCAACTGCTGGCC 197 Query 25054 GGTCGCCGCGAGCGCGGCCGCCACCGGCTGCGTATCGAGGCCGGGCGCCGCGAGAATGCG 25113 | ||| | || |||| || |||||| | | |||||||| ||| | | |||||||| Sbjct 198 GATCGAGACCAGGGCGGTGGCTACCGGCAGGCTGTCGAGGCCTGGCACGCCAAGAATGCG 257 Query 25114 CGGCTTCACGCCGA-GCGCACCCTGCGCGGCGAGCAGCGC 25152 |||| || |||| || || || |||||||| || || Sbjct 258 CGGCACCAAACCGACACGGGCCTTG-GCGGCGAGGAGGGC 296 >seq10415 Length=2169 Score = 80.6 bits (88), Expect = 6e-11 Identities = 145/203 (71%), Gaps = 18/203 (9%) Strand=Plus/Plus Query 1115 GTGTCTTCCTGGAACCACGGGTCGATCA--TCGACGACACGATATCCATCACGAGCGCGT 1172 |||||||||||| |||| || || || | ||| ||| || | || || |||| Sbjct 549 GTGTCTTCCTGGTACCAGGGCTCAATGAACTCGTTGACC--ATGCTGACGACCAGGGCGT 606 Query 1173 CGAGGTTCTCGTAATC---GCCCGCCTTGCCGATGAGCACCTTGCCGGCCTGCT-TCGCG 1228 ||| ||| ||| |||| |||||| |||||| | | ||||||| |||| ||| Sbjct 607 CGATGTTTTCGAAATCCTTGCCCGC---GCCGATCTGGATCTTGCCG--CTGCCGTCGAC 661 Query 1229 C-CTTCGTGCAGCACGCG--CTGCGCTGCGCGCTCGCGGTACTGTTGCAGCCAGCCGATG 1285 | ||||||||| |||||| | ||| | | ||| | | ||||||||||| ||| Sbjct 662 CACTTCGTGCAACACGCGAGCGGCGTTTTCCAGGCGCATT--TTCTGCAGCCAGCCAATG 719 Query 1286 TTCACGTCCTGCAACAGCGGGTT 1308 ||||||||||||||||||||||| Sbjct 720 TTCACGTCCTGCAACAGCGGGTT 742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117266550156448