Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq4423 152 1e-32 seq10415 138 3e-28 seq11062 120 8e-23 >seq4423 Length=667 Score = 152 bits (168), Expect = 1e-32 Identities = 186/254 (73%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 4813 AGCGCGGCGTGGCTCAGGTCGAGCTTGATCTGTTTGTCCTTGGCCTTGCCGCGGTTGAAC 4872 || ||| |||| || ||||||||||||| | | || | ||||| |||||| Sbjct 256 AGGGCGTTGTGGGACACGTCGAGCTTGATCCGCTGCGCCGCCGGTTTGCCCTTGTTGAAG 197 Query 4873 AGTGCGCCGGACCAGAACGGATAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAAGTAG 4932 | |||||| |||||| | |||||||| || | || ||| || ||||| ||||||||| Sbjct 196 CGCTCGCCGGTCCAGAAGGTGTAGGCCTCGTGTGCCATGCTCGATGGCGTCGAGAAGTAG 137 Query 4933 GTCTGACGCCAGTGCTTGTGGATCGCCATGCCGGAGGCGACCTTGCGCAGTTCCTGGAAG 4992 ||| | || | ||||| || |||||||||||| |||||||||| ||||||| ||| Sbjct 136 GTCCGGCGGTACTGCTTCTGCATCGCCATGCCGCTGGCGACCTTGTTGAGTTCCTTGAAC 77 Query 4993 CGCGGCACCCAGAAGTATTCATCGAAGTACAGGTTGCCGTGATACGACTGCGCGGTGCGG 5052 ||||||| |||| |||||||| | |||||||||||| ||| ||||| ||| Sbjct 76 TTGAAGGTCCAGAAGAATTCGTCGAAGTAGAAGTTGCCGTGATAGCCCTGGGCGGTCCGG 17 Query 5053 GCGTTCGTGCCGAG 5066 ||||| || || || Sbjct 16 GCGTTGGTCCCCAG 3 Score = 109 bits (120), Expect = 1e-19 Identities = 157/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 4525 GGGTCGTAGCCGACCCACACCGGCCGGTTGCCGAACGGCCGTGGCGCGAACGGCCGGAAG 4584 ||||| ||||| ||||| ||| | || | ||||||||||||| ||||| || | || Sbjct 613 GGGTCATAGCCCACCCAGACCTGGCGATCACCGAACGGCCGTGCGGCGAAGGGTTTGTAG 554 Query 4585 TCTTC---CCATACCTCCCAACTGTCCACCATCCCGCGCATGAGCATCGCGAGCGGAAAC 4641 || || ||| | ||||||||||||||||| | | || | |||||| || || || Sbjct 553 TCCTCTGCCCAGAGGTCCCAACTGTCCACCATGCAGGGCTGCAACATCGCCAGGGGGAAG 494 Query 4642 ACCGACGCGTTGTCGTCGATGAATACGCACATGAGCAGGTTGGCGAAATCGAGTTCGCTG 4701 | ||| |||||||||||| |||||| |||||||| ||| | || | Sbjct 493 ATGCTCGCCCCGTCGTCGATGAACTGGCACATCAGCAGGTTCTGGAAGGCCTCGGCGTCG 434 Query 4702 TACTCCAGGCGCAGCTGGTCGAGGTCGAACAGGTTGCAGCC 4742 ||||| || | ||||| ||| ||||||||||| | ||||| Sbjct 433 TACTCAAGCCTCAGCTCGTCCAGGTCGAACAGATCACAGCC 393 >seq10415 Length=2169 Score = 138 bits (152), Expect = 3e-28 Identities = 201/280 (72%), Gaps = 12/280 (4%) Strand=Plus/Minus Query 6804 ACACCGGAGTCAACACAATGCGCAACGATACCCGCCGCCTCTTCGCGGCGTACAAGGCTG 6863 ||| ||||| ||||| ||||| |||||||||||| ||||||| || ||| ||| Sbjct 1305 ACATCGGAG--AACACCATGCGTAACGATACCCGCGTCCTCTTCAACGCCTAC----CTG 1252 Query 6864 CAA----TCGCCAAGCTGAACGGCGTGGAGCG-CGTCGACGAGAAGTTCAGCGTCGCGCC 6918 ||| |||| | ||| |||||||| |||| |||| | || |||| | ||| || Sbjct 1251 CAACAACTCGCGCAACTGCACGGCGTG-AGCGACGTCACCACCAAATTCACGGCCGCACC 1193 Query 6919 GAGCGTCCAGCAGAAGCTGGAGACCAAGGTTCAGGAGTCGAGCGACTTCCTGAAAAGCAT 6978 |||||| |||| ||||| ||| |||||||||| |||| ||||| | ||| Sbjct 1192 CAGCGTCGCCCAGACCCTGGAAACCCGCATTCAGGAGTCCAGCGCGTTCCTCAGCGCCAT 1133 Query 6979 CAACTTCTACGGCGTGCCCGAACAGGAAGGCGAAAAGATCGGCCTGGGCGTGTCCGGCCC 7038 |||| | |||||||| |||||||| ||||| ||||||||| | ||| | ||| | Sbjct 1132 CAACGTTTACGGCGTCTCCGAACAGTCGGGCGAGAAGATCGGCATCGGCATCGACGGGAC 1073 Query 7039 GGTGGCAAGCACCACCGACACCACCCAGCAGGACCGGGAG 7078 | || |||||||||||||||||| ||||||| ||| Sbjct 1072 CATTGCCAGCACCACCGACACCACCGTCAAGGACCGCGAG 1033 Score = 100 bits (110), Expect = 7e-17 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 7708 CCGTCGCACGATCCTGGACAACGCGAAGCGCGATCGCATCGAAAACTACGAGTCGAGCAA 7767 ||| ||||| || | ||||| || || ||||| |||||||| |||| ||| ||| ||| Sbjct 124 CCGCCGCACCGTCGTCGACAATGCCAAACGCGACCGCATCGAGAACTTCGAATCGGTCAA 65 Query 7768 CGACGCGTACGTGATCGAAGACCTGGCGTGCGCGGCCATGGCCGAAAACATCGCACTG 7825 || || |||||||||||||||| ||||| |||||||||||||||||| | ||| Sbjct 64 TGAAAGCTATGTGATCGAAGACCTGGGCTGCGCTGCCATGGCCGAAAACATCACCCTG 7 >seq11062 Length=2017 Score = 120 bits (132), Expect = 8e-23 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 19245 GCCGCGCATCCTGGCTGTGCCGGGGCTCGACAGCCTGCCAGTCGGGACCGAGCTGGTCAC 19304 ||||||||| || | ||||| || |||||||||||||| || | |||| |||||| | Sbjct 261 GCCGCGCATTCTTGGCGTGCCAGGCCTCGACAGCCTGCCGGTAGCCACCGCCCTGGTCTC 202 Query 19305 CATCGCGCAGAAGCTGCGCGCCTTCGCCTACCTGTCGGCGTACGG--CTGCCAAACCAAG 19362 |||| ||| || |||| |||||| ||| |||| ||| || | || | ||||| Sbjct 201 GATCGGCCAGCAGTTGCGGGCCTTCTGCTA--TGTCAGCGCCTGGGACAGCAAGACCAAA 144 Query 19363 GAAGAGGCCGTCGCCTACCGCAGCAACTTCGGCCAGCGCGAAGCGATGGTGATGTGGCCG 19422 || || ||||||||||||||| |||||||| || ||||| |||||||| ||||| Sbjct 143 GAGGAAGCCGTCGCCTACCGCGAGAACTTCGGTGCACGAGAAGCAATGGTGATCTGGCCT 84 Query 19423 GATTTCGTCGGCTGGGATACCGCCGCCAATGC 19454 || ||| |||| | ||| || |||| || Sbjct 83 GACTTCCAAAACTGGAACACCACCACCAACGC 52 Score = 87.8 bits (96), Expect = 4e-13 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 18994 TTCCCGCTCGACACCCCCGTCCTGCTGACCAACCCGCAGGCCTACATCGGCAAGGCCGGC 19053 ||||||||||| ||||| ||||||||||||||| ||| || |||| || |||||| Sbjct 610 TTCCCGCTCGATACCCCGGTCCTGCTGACCAACGTTCAGACCGCGGTCGGTAAAGCCGGC 551 Query 19054 GACAAAGGCACGCTCGCCCACACGCTCGACGCCATCACCGACCAGACCAACCC 19106 ||| ||||| || | | || ||| | |||||| ||||||||||||| || Sbjct 550 ACCAAGGGCACCCTGGGCGCCAGTCTCCAGGCCATCGCCGACCAGACCAAGCC 498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123889429094128