Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_011287.1 Length=58554 Score E Sequences producing significant alignments: (Bits) Value seq10339 170 7e-38 >seq10339 Length=11660 Score = 170 bits (188), Expect = 7e-38 Identities = 517/779 (66%), Gaps = 40/779 (5%) Strand=Plus/Plus Query 42714 GCTGATCGGCAAACCGGTGATGCTCGGGCAGGGCATG-AACCTGCAACAGGCACA-CACC 42771 ||||| | |||| || ||| |||| |||||| | || |||||||| | ||||| | || Sbjct 6110 GCTGAGCAGCAAGCCCGTGCTGCT-GGGCAGCGGCTGCAACCTGCAGC-GGCACTGCGCC 6167 Query 42772 TGCG---TCTACATCGGCATCACACACAAGTTCAACGACCTCATCCAAAGCCTGCACCGG 42828 || | ||||| | |||||| ||||||| |||| ||||||| ||||||| Sbjct 6168 TGGGCGATCTACCTGGGCATCGGCTTCAAGTTCGCCGACTTCATCCAGTCGGTGCACCGC 6227 Query 42829 ATCCAGCGGTTCGGCCAAACCCACCCC-TGCACAGCCCATCTCATCCACTCCGAAACCGA 42887 ||||||| ||| || || | || ||| || | | || ||| || |||| |||| Sbjct 6228 CTCCAGCGCTTCCTGCAGACGCGCCAGGTGCGCATCG-ACCTGATCTACACCGAGGCCGA 6286 Query 42888 ACGGGAAGTGGTTCGCATCATC---CGCGAGAAATGGGCACAACACCGAGAGT---TGAC 42941 || || ||| || | | | ||| |||||||| || ||| ||| || | Sbjct 6287 GCGCGAGGTGCGCCGGACCCTGGAACGC---AAATGGGCCCAGCACAAGGAGCAAGTGGC 6343 Query 42942 ATCAACG-ATGACCGACATCATCCACGAATACGGGCTTGACCC-CGAGGCAATCTCGGAA 42999 | || ||||| || |||||| | |||| |||| ||| | | || ||| || | Sbjct 6344 A----CGCATGACGGAAATCATCAAGGAATTCGGG-TTGTCGCACGCGGCCATGATCCAG 6398 Query 43000 GCGCTGCAACGCTCCATCGGATGCGAACGCATCGAAGCATCCG-GCGAGGGATGGC---- 43054 ||||| ||| |||| || || ||| |||| | | || ||| || ||| Sbjct 6399 ACGCTGAGCCGCGCCATGGGCGTGGAGCGCGTCGAGG--TGCGCGCGCCGGGCGGCGAGT 6456 Query 43055 ---TGTTCGCCAACAACGACTGCGTACCCGAAACCGAGTCG-ATGGACGACAACTCGGTG 43110 || | | ||||||||||||||| ||| || | | || |||| | | || ||| Sbjct 6457 ACGTGCTGGTCAACAACGACTGCGTGAACGAGAC-GCGCCGCATGGCCAGCGACAGCGTG 6515 Query 43111 GACCTGATCGTCACCAGCATTCCGTTCTCGAACCACTACGAATACACGCCGAGCTACAAC 43170 | |||| | | |||||||| || ||| | || ||||| ||| |||| | || | | Sbjct 6516 GGCCTGGTGCTGACCAGCATCCCCTTCAGCACGCAGTACGAGTACTCGCCCAACTTCGCC 6575 Query 43171 GACTTCGGCCACACCGACGACAACGCCCATTTCTGGGCCCAGATGGACTACCTCACGCCG 43230 |||||||||||||||||| |||||| || |||| |||||||||| ||| |||| Sbjct 6576 GACTTCGGCCACACCGACAGCAACGCGCACTTCTTCCAGCAGATGGACTTCCTGGTGCCG 6635 Query 43231 CAACTGCTGCGGGTCCTCGCTCCTGGCCGGATCTATGCCTGCCACGTCAAGGACCGCATC 43290 | |||||||| || || || ||| || | ||| |||||||||| |||||||| Sbjct 6636 GAGCTGCTGCGCGTGCTGATGCCGGGCAGGGTGGCCGCCATCCACGTCAAGAACCGCATC 6695 Query 43291 TTG---TTCGGCAACGTCACCGGCGCAGGCGTCCCCACCGTCTCCCCGTTCCACGCCGAG 43347 || ||||| || |||| ||| ||| |||| | ||| ||| ||| || Sbjct 6696 GTGCCCAGCGGCATGGTGGAGGGCGTCGGCTTCCAGACCGAGTACCCCTTCGACGTGGAC 6755 Query 43348 GCGATCTTTCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTGGTCACC 43407 | ||| | |||| ||||||| ||| | | ||| | ||| | |||||| Sbjct 6756 ACCATCGCCTGCTTCCGCCGGGCCGGCTTCCACTTCGTGGGCCGCAAGACCATCGTCACC 6815 Query 43408 GATGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGCAAAGA 43466 || |||||||| || ||||||||||| ||||| ||||||| |||||| ||||| || Sbjct 6816 GACGTGGTGCGCGAGAACAACCAGACCTACCGCCTGGGCTACAGCGAGCAATGCAAGGA 6874 Score = 149 bits (164), Expect = 2e-31 Identities = 299/430 (70%), Gaps = 15/430 (3%) Strand=Plus/Plus Query 41210 AGGTTGACCCGGGCGAGATTCACTCGATGTTGTTGCCGCACCAGCGCGATCTGGTGCGTT 41269 |||| |||| || ||| | || || || || |||||||||| || | |||| | Sbjct 5053 AGGTCGACCAGGCCGACGTCAACCCGCTGCTGAAGCCGCACCAGATCGCTGCGGTGATCT 5112 Query 41270 GGGCGGTC-GCCGGGGGTAGGCGCGCGATCTTCGCGGCGTTCGGCCTGGGCAAGACGGTG 41328 |||| || ||| ||| | ||| ||| | ||| ||| ||||||||||||||||| | Sbjct 5113 GGGCCATCCGCCTGGGCTGCGCG-GCGCTGTTCATGGCCTTCGGCCTGGGCAAGACCTTC 5171 Query 41329 ATGCAGCTGGAGATCGTGCGCCTGTCGCTAGCCAAGCATGGCGGTGGGCGAGGCTTGATC 41388 ||||| |||||||||||||| | || ||| |||| ||| || ||| ||||| Sbjct 5172 GTGCAGTTGGAGATCGTGCGCATCGTGCGTGCC-CGCAT--CGGCGGCATGGGCCTGATC 5228 Query 41389 GTGATGCCGCTGGGCGTGCGGATCGAGTTCGCCCACGACGCCAACATG-CTGGGCATCGA 41447 || || |||||||||||||| |||||| || ||||| | || | || |||||| Sbjct 5229 GTCATCCCGCTGGGCGTGCGTCAGGAGTTCATCCGCGACG-CGGCACGCCTTGGCATCAC 5287 Query 41448 AACCCGGTTTGTTCGCCGCACAGAAGAAGTCGGCGGC---GACGGTATCTACCTCACCAA 41504 | ||| | ||||||| || |||| || || | |||| |||||||||||||| Sbjct 5288 GGTCAAGTTCATCCGCCGCATCGAGGAAGCCGACGACCCGAACGGCATCTACCTCACCAA 5347 Query 41505 CTACGAGAGCGTTCGCGATGGAAAGCTCGACCCGACACTGTTCACGGCCGTTTCACTCGA 41564 |||||| | | ||||| | ||||| |||||| ||||||| | | || || Sbjct 5348 CTACGAAACGATCCGCGACCGCAAGCTGGACCCGCTGCTGTTCAGCGTGGCCAGCCTGGA 5407 Query 41565 CGAGGCGAGCGTG-CTGCGCTCGTTCGG-GTC--CAAGACGTACCAGTCGTTCCTGGAGC 41620 ||||||| || || |||||| ||||| | | |||||| | || |||| ||| || Sbjct 5408 CGAGGCG-GCATGCCTGCGCGGCTTCGGCGGCAGCAAGACCTTCCGCGAGTTCATGGCGC 5466 Query 41621 TGTTCGACGG 41630 |||||| ||| Sbjct 5467 TGTTCGCCGG 5476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187219509138784