Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq7750 125 5e-24 seq8226 89.7 4e-13 seq13049 84.2 2e-11 seq12388 82.4 5e-11 >seq7750 Length=8304 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| | |||||| || || |||||||| |||||||| ||| | Sbjct 2710 CCACCGCGCAGACGGAGAACAAGATGAAGAGTTGACTCTTTTTGAATGTTGTAGTCGGAG 2769 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | ||||||| | || || || ||| | ||||||||||||||||| ||| Sbjct 2770 AGAGTACGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGA 2829 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || ||| || || | || || || || |||||| Sbjct 2830 ATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCGATTGTGTCAGAGGCTTCTACC 2889 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||||||||| || || || ||||| || ||||| |||||||| Sbjct 2890 TCGAGGGTAATGGTCTTTCCAGTAAGAGTCTTCACAAAGATTTGCAT 2936 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | ||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 1353 TTACCGGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATTTTG 1412 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| |||| || || || ||| || || | ||||||||| || || ||| Sbjct 1413 GCCTTGACATTTTCGATTGTGTCAGACGCTTCGACCTCAAGGGTAATGGTCTTTCCGGTC 1472 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | ||||||||| || || ||||| Sbjct 1473 AAAGTTTTTACGAAGATCTGCAT 1495 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||||||||| || || || || |||||||| ||| |||| | | ||||||| Sbjct 784 AACGAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGACCGTCTTC 843 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || || ||| | ||||| || || || || ||||||||||| ||||| Sbjct 844 AAGCTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 903 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || ||| |||| || || ||| ||| || || | || |||||||| Sbjct 904 GATCTTGGCCTTGACATTTTCGATTGTGTCGGACGCTTCGACCTCAAGAGTGATGGTTTT 963 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || || || ||||| Sbjct 964 TCCGGTGAGTGTCTTGACGAAGATCTGCAT 993 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATT 15105 |||||||||||||| || || |||||||||||||| ||| ||| || ||| || Sbjct 3080 ATCAAACGCTGTTGATCAGGGGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTGACATTT 3139 Query 15106 TCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165 || ||||| ||| | ||| || || | || ||||| ||||| ||||| ||||| || Sbjct 3140 TCGATAGTGTCGGAAGCTTCGACCTCAAGAGTGATGGTCTTACCAGTCAGGGTTTTGACG 3199 Query 15166 AAAATTTGCAT 15176 || || ||||| Sbjct 3200 AAGATCTGCAT 3210 >seq8226 Length=1064 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 15020 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCT 15079 |||| || | |||||| |||||| | ||||| ||||| ||||| || || ||||||| Sbjct 628 CGTCCTCAAGTTGTTTTCCAGCGAAGATCAATCGCTGCTGGTCTGGAGGGATACCTTCCT 687 Query 15080 TGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAA 15139 |||| ||| ||| || ||| |||| || | || ||| || |||||||||| Sbjct 688 TGTCTTGAATCTTGGCCTTGACATTTTCAATGCTGTCTGAGGCTTCGACTTCTAAGGTAA 747 Query 15140 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || || || || || || |||||||||||||| Sbjct 748 TTGTCTTGCCAGTAAGGGTCTTGACAAAAATTTGCAT 784 >seq13049 Length=11502 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | | ||| | ||| || || || || || || ||||||||||| Sbjct 10310 TGCCACCACGAAGACGGAGAACGAGATGGAGTGTTGACTCCTTCTGGATGTTGTAATCAG 10251 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | ||||| | || || ||||| | || | ||| || ||||| | Sbjct 10250 AGAGGGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAAGATAAGACGTTGCTGGTCTGGGG 10191 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | |||||||||||||| |||||| ||| || | || ||| |||| ||| | Sbjct 10190 GGATTCCTTCCTTGTCCTGGATTTTGGCTTTGACGTTCTCAATACTATCAGAGGCTTCGA 10131 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | ||||||||||| || || || || || || || ||||| || ||||| Sbjct 10130 CTTCTAAGGTAATTGTCTTGCCAGTAAGGGTCTTGACAAAGATCTGCAT 10082 >seq12388 Length=21549 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||| ||||| || || || || || ||||| || || | | | ||||| Sbjct 15490 AACGAGATGGAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAGGGTGCGGCCATCTTC 15431 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || || ||| | || | ||| || ||||| ||||||||||||||||| Sbjct 15430 AAGCTGCTTCCCGGCGAAGATAAGACGTTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTG 15371 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| || || |||| ||| |||| ||| || |||| ||| || ||||| Sbjct 15370 GATTTTGGCCTTGACGTTTTCAATACTATCAGAGGCTTCGACTTCTAGGGTGATCGTTTT 15311 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 ||| || || || |||||||| || ||||| || Sbjct 15310 ACCAGTGAGGGTCTTTACAAAGATCTGCATGTT 15278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357329922349820