Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq12388 127 2e-24 seq8226 114 1e-20 seq13049 113 4e-20 seq7750 104 2e-17 seq10049 100 3e-16 seq1186 96.9 3e-15 >seq12388 Length=21549 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || || || || |||||||||||||| || ||||| ||| || Sbjct 15998 ACCAAGTGAAGAGTCGATTCCTTCTGAATATTGTAATCAGACAGGGTGCGGCCATCTTCA 15939 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| ||||| ||| |||| | ||||| ||||||||||| || |||||||||||| | Sbjct 15938 AGCTGCTTTCCGGCGAAGATGAGACGCTGTTGATCGGGAGGGATTCCCTCCTTGTCCTGG 15879 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 ||||| |||| | || | | |||| | |||||||||| ||| | |||||| Sbjct 15878 ATTTTGGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGACTTCGAGGGTGATCGTTTTA 15819 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || |||| || || |||||||| |||||| Sbjct 15818 CCAGTCAACGTCTTGACAAAAATTTGCATG 15789 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||||||||| || | ||||| ||| || ||||| || || Sbjct 15477 GTTGACTCCTTCTGAATATTGTAGTCAGATAGGGTGCGGCCATCTTCAAGCTGCTTCCCG 15418 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | || ||||| || ||||| || || |||||||| |||||| |||| Sbjct 15417 GCGAAGATAAGACGTTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATTTTGGCCTTG 15358 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | | || | |||||||| | ||| | |||||| || || || || Sbjct 15357 ACGTTTTCAATACTATCAGAGGCTTCGACTTCTAGGGTGATCGTTTTACCAGTGAGGGTC 15298 Query 127097 TTTACAAAAATCTGCATG 127114 |||||||| ||||||||| Sbjct 15297 TTTACAAAGATCTGCATG 15280 >seq8226 Length=1064 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || |||||||||||||| | ||||| ||| || | ||||||||| Sbjct 816 GTTGACTCCTTCTGAATATTGTAATCAGAAAGGGTGCGGCCATCTTCCAACTGTTTTCCG 875 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||||||||||||| || || || ||||||||||||||| || || |||| Sbjct 876 GCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 935 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | | | || | |||||||||| || | ||||| || |||| || Sbjct 936 ACGTTTTCAATGCTATCAGAGGCTTCGACTTCGAGAGTGATTGTTTTACCAGTCAACGTC 995 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| || |||||| Sbjct 996 TTGACAAAGATTTGCATG 1013 Score = 100 bits (110), Expect = 3e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 126935 TTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGC 126994 ||||| ||| || ||||| || || || |||||||||||| |||||||||||||| Sbjct 606 TTGTAGTCGGACAAGGTGCGGCCGTCCTCAAGTTGTTTTCCAGCGAAGATCAATCGCTGC 665 Query 126995 TGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCC 127054 || || ||||| || || |||||||| || || ||||| | ||| | | |||| Sbjct 666 TGGTCTGGAGGGATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTTTCAATGCTGTCT 725 Query 127055 GTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | |||||||| | ||| | || ||||| || || || || |||||||| |||||| Sbjct 726 GAGGCTTCGACTTCTAAGGTAATTGTCTTGCCAGTAAGGGTCTTGACAAAAATTTGCATG 785 >seq13049 Length=11502 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || || || ||||| || ||||| || | Sbjct 10536 CCACCACGGAGACGGAGGACCAAGTGCAGAGTCGATTCCTTTTGTATGTTGTAGTCAGAC 10477 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || |||||||| ||| ||||||||||||| ||||||||||| Sbjct 10476 AGGGTGCGGCCATCCTCAAGTTGTTTTCCGGCGAAGATCAATCGCTGTTGATCGGGAGGG 10417 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||| |||||| ||| | | || |||| | || | | |||| | ||||| Sbjct 10416 ATTCCCTCTTTGTCC-TGAATCTTGGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGAC 10358 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||| || | |||||| || || || || || || || ||||||||| Sbjct 10357 TTCGAGAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAGATCTGCATG 10309 >seq7750 Length=8304 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | |||| |||||||| | || ||||| || ||||| ||||||||| Sbjct 1496 TCCTCCACGGAGACGCAGAACCAAATGCAAGGTGGACTCCTTCTGAATGTTGTAATCGGA 1555 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || ||| || || || || ||||| ||| ||||||| ||||||||||| || || Sbjct 1556 GAGTGTACGACCGTCCTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGCGG 1615 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCG-TACTCTCGA 127064 || || ||||| ||| ||| || ||||| | |||| ||||| | | || || | Sbjct 1616 AATTCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGATGCT-TCAA 1674 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | || || ||||| || || || || || |||||||| Sbjct 1675 CTTCCAGAGTGATTGTCTTTCCGGTGAGGGTCTTAACGAAGATCTGCAT 1723 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | || | || | ||| | || |||||||||||||| ||||| ||| Sbjct 2709 TCCACCGCGCAGACGGAGAACAAGATGAAGAGTTGACTCTTTTTGAATGTTGTAGTCGGA 2768 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || || || ||||| ||||| ||| ||||||| ||||| || || || || Sbjct 2769 GAGAGTACGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCTGGGGG 2828 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| ||| || ||| | | |||| ||||| | || || Sbjct 2829 AATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCGATTGTGTCAGAGGCTTCTAC 2888 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || || || || ||||| || ||||| || ||||| Sbjct 2889 CTCGAGGGTAATGGTCTTTCCAGTAAGAGTCTTCACAAAGATTTGCAT 2936 >seq10049 Length=10599 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||||||||| ||| | || ||| || || ||||| ||||| Sbjct 9202 GTTGACTCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCGTCTTCAAGCTGCTTTCCG 9261 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||||||||||||| || || || || || ||||||||| ||| || |||| Sbjct 9262 GCGAAGATCAATCGCTGCTGGTCTGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTG 9321 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | | | || | |||||||||| || | ||||| || || || || Sbjct 9322 ACGTTCTCAATGCTATCAGAGGCTTCGACTTCGAGAGTGATGGTTTTACCAGTGAGGGTC 9381 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 9382 TTCACGAAGATCTGCATG 9399 >seq1186 Length=9182 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || |||||| |||| | || || ||||| || || ||||||||||||||| |||||| Sbjct 3183 TTACCAGCGAAGATAAGACGTTGTTGATCAGGCGGAATGCCCTCCTTGTCCTGGATTTTG 3242 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 ||| | | ||||| |||||| | ||||||||||| || | || ||||| || Sbjct 3243 GCCTTCACATTTTCGATGGTGTCGGACGCCTCGACTTCGAGCGTAATTGTCTTGCCCGTG 3302 Query 127091 AGAGTTTTTACAAAAATCTGCAT 127113 |||||||| || || |||||||| Sbjct 3303 AGAGTTTTGACGAATATCTGCAT 3325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475416089532480