Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_011802.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq4764 203 9e-48 seq6313 123 7e-24 >seq4764 Length=15780 Score = 203 bits (224), Expect = 9e-48 Identities = 327/460 (71%), Gaps = 14/460 (3%) Strand=Plus/Plus Query 38988 TCATACAATGAGCAGCGAGAATGGTGTTTTGCATGTGATAGGCGTGTTCAATGGCAAACT 39047 || ||| |||| || || | ||||||| ||||| | || ||||| ||||||| |||| Sbjct 11108 TCGTACCGTGAGTAGTGAAAGTGGTGTTCTGCATATTATTGGCGTATTCAATGACAAAAA 11167 Query 39048 ATCTACTATTGCCCATGAGTGCGCTCACATGGCATTCGATATCTGCTCA-AGGGTCGGTG 39106 || || | || ||||| ||||| || | || ||||||||||| ||| | || |||| Sbjct 11168 CTCGACATTAGCTCATGAATGCGCCCATGTTGCTTTCGATATCTG-TCATCGTGTTGGTG 11226 Query 39107 TTGATGTTGAAT-CAGGAAGAGCCAACGAGACTTACTGCTACTTAATGAGCAGGCTTGTT 39165 | ||| ||| | |||| || || ||||| | |||||| | || ||||| | ||| Sbjct 11227 TGAATG-TGAGTACAGGTGAGGCAAATGAGACATTTTGCTACCTGATAAGCAGATTGGTT 11285 Query 39166 GAGTTCTGCGAGCGACATATCAAAAAGCCGGAGTGACCCGGCTTGATTATTACTT----T 39221 ||||| |||||| | ||||||||||||||||||||||||||| | | |||||| Sbjct 11286 GAGTTTTGCGAGAAGCCTATCAAAAAGCCGGAGTGACCCGGCTT-AGTTTTACTTACCGC 11344 Query 39222 TTGCTGTCTGGAGTTCGCTTATCTAATACCCAGCCATGACCTGGCTTTGTTGTTGGTGGA 39281 ||||| | ||||||| ||||| | | |||| | ||| | || | ||||||||| Sbjct 11345 TTGCTATTGGGAGTTCTTTTATCAAGTTCCCAAGTGTTACCGGATTTAGATGTTGGTGGC 11404 Query 39282 AGCCTTTCGTTGTCCTTGACGGTGGCAAAATTGTCTTTCTTACCGCCGCGCGGGCCAACT 39341 | ||||||| ||| | || ||||| ||||| || | || ||||| || || || ||| Sbjct 11405 AATTTTTCGTTATCCCTTACAGTGGCGAAATTATCAGTTTTGCCGCCACGAGGACCTACT 11464 Query 39342 TCTTGGTATATTCCGCCGTTTTTTCCTGTGTTTTCACCTGGTTTTTTCGCCATGATATAC 39401 || | || || ||||| | || || || ||||| || || || || |||| || | Sbjct 11465 TCACGATAGATACCGCCATCCTTACCAGTATTTTCTCCGGGCTTCTTACCCATAAT-GAT 11523 Query 39402 CTCAACA---TACACCCGTTATTGGGCGA-TTAAATATTG 39437 ||| | | | ||| || ||||| || | |||||||||| Sbjct 11524 CTCCATATTGTTCACTCGATATTGAGCCAGTTAAATATTG 11563 >seq6313 Length=4174 Score = 123 bits (136), Expect = 7e-24 Identities = 224/325 (69%), Gaps = 2/325 (1%) Strand=Plus/Plus Query 22764 ATGAAGTACCCAACAGTTATGGTCAATGGTGTGTCCGTTCGTGTTGATGAGGACGGACGC 22823 ||||| || |||||||| || || ||||| || || |||||||| ||| | | || | Sbjct 3713 ATGAAATATCCAACAGTAATTGTTAATGGAGTATCTGTTCGTGTGGATAATGCAGGCAGA 3772 Query 22824 TACAACTTAAACGATCTCCATGCAGCAGCAGTTGCAAATGGAGAGGCTACAGAGCAACAG 22883 || | | ||||||| || || || || ||||| ||| || || || |||||| |||| Sbjct 3773 TATAGCCTAAACGACCTACACGCCGCCGCAGTATTAAAAGGCGAAGCGACAGAGTCACAG 3832 Query 22884 CGCCCAAGCCAGTTTTTGTGTAGCGCG-CAGATAAAACGCTTCATAAAAGCACTAGAGGC 22942 || || | | | ||| | ||| || ||| |||| | || | ||| | || | Sbjct 3833 CGACCCAACAAATTTATTCGTAATGCATCAGTAAAAAAGTTTGTTTCC-GCATTGGACTC 3891 Query 22943 CAAAGTGCAAAAAAGCACTTTGAAACAAATTCAACCACTTAAAATCATTAAAGGTGGTAC 23002 || | |||||||| | ||||| ||| |||| ||||||| | |||| || || | Sbjct 3892 CAGAAGACAAAAAAGTCGTCTGAAAGAAAATCAATCACTTAAGGTTGTTAATGGGGGCGC 3951 Query 23003 CGAACCTGGTGTGTGGGGCGTTGAACTACTGGCAATCAGATATGCAGCATGGATTAAGCC 23062 || | || || ||||| | || || |||| || | |||||||| ||||||||||| Sbjct 3952 TGACCAAGGCGTATGGGGTGCAGAGCTTTTGGCTATTCGCTATGCAGCCTGGATTAAGCC 4011 Query 23063 GGAATTTGAAATCGAGGTTTATGAA 23087 || |||||||| ||||||||| Sbjct 4012 TGAGTTTGAAATTAGTGTTTATGAA 4036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134066906340872