Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq8226 116 3e-21 seq13049 107 2e-18 seq6327 91.5 1e-13 seq1186 89.7 5e-13 seq10950 86.0 6e-12 seq12388 84.2 2e-11 seq10049 84.2 2e-11 >seq8226 Length=1064 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || ||||| ||||| || ||||| ||||| | ||| ||| ||| Sbjct 804 ACGAGATGGAGGGTTGACTCCTTCTGAATATTGTAATCAGAAAGGGTGCGGCCATCTTCC 863 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || |||||||| ||| | |||||||| |||||||| || |||||||| || || || ||| Sbjct 864 AACTGTTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGA 923 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| ||| | | | || || | |||||||||||||| | ||||| Sbjct 924 ATCTTGGCCTTGACGTTTTCAATGCTATCAGAGGCTTCGACTTCGAGAGTGATTGTTTTA 983 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || || ||||| |||||||| Sbjct 984 CCAGTCAACGTCTTGACAAAGATTTGCAT 1012 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || | ||||||||| ||| | |||||||| |||||||| || || || ||||| || Sbjct 630 TCCTCAAGTTGTTTTCCAGCGAAGATCAATCGCTGCTGGTCTGGAGGGATACCTTCCTTG 689 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| || |||| ||| | | |||| || | |||||||| | |||| Sbjct 690 TCTTGAATCTTGGCCTTGACATTTTCAATGCTGTCTGAGGCTTCGACTTCTAAGGTAATT 749 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || || || || |||||||||||||| Sbjct 750 GTCTTGCCAGTAAGGGTCTTGACAAAAATTTGCAT 784 >seq13049 Length=11502 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || ||||| ||||| ||||| || ||||| || ||| ||| || Sbjct 7402 ACGAGATGGAGTGTTGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCA 7343 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | |||||| || || | || | ||||||||||| || |||||||| ||||| || || Sbjct 7342 AGTTGTTTGCCAGCAAAGATAAGACGTTGCTGGTCTGGAGGAATGCCCTCTTTGTCCTGG 7283 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| |||| ||| | | |||| || | |||||||||||||| | |||||| Sbjct 7282 ATTTTGGCCTTGACGTTTTCAATGCTGTCTGAGGCTTCGACTTCGAGAGTGATCGTTTTA 7223 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || || || ||||| Sbjct 7222 CCAGTGAGGGTCTTCACGAAGATCTGCAT 7194 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 ||||| || ||||||||||| || || || || | ||| ||| || | |||| Sbjct 10512 TGCAGAGTCGATTCCTTTTGTATGTTGTAGTCAGACAGGGTGCGGCCATCCTCAAGTTGT 10453 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | |||||||| || || || || || || || ||||| || ||||| || Sbjct 10452 TTTCCGGCGAAGATCAATCGCTGTTGATCGGGAGGGATTCCCTCTTTGTCCTGAATCTTG 10393 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||||| || | || | | |||| || | |||||||||||||| | |||||| || || Sbjct 10392 GCTTTGA-CGTTCTCAATGCTGTCTGAGGCTTCGACTTCGAGAGTGATCGTTTTACCAGT 10334 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || ||||| Sbjct 10333 GAGGGTCTTCACGAAGATCTGCAT 10310 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||| |||||||| || || ||| | ||| || || | |||| Sbjct 10056 TGAAGAGTCGATTCTTTTTGGATGTTGTAGTCGGACAAGGTGCGGCCGTCTTCAAGTTGT 9997 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | ||||||||||| || || | |||||||| || || ||||| Sbjct 9996 TTGCCAGCAAAGATAAGACGTTGCTGGTCTGGAGGGGTTCCTTCTTTGTCCTGGATTTTA 9937 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||||| || | || | | |||| || | |||||||||||||| | |||||| || || Sbjct 9936 GCTTTGA-CGTTCTCAATGCTGTCTGAGGCTTCGACTTCGAGAGTGATCGTTTTACCAGT 9878 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || ||||| Sbjct 9877 GAGGGTCTTCACGAAGATCTGCAT 9854 >seq6327 Length=14581 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659 ||| | ||||| || || || ||||||||||||||||| || ||||| || || | || Sbjct 6346 CAAATTGAAACTGGTACACCTTACATGCTCTACAAAGATGCTTGCAATAGAAAGTCGAAC 6405 Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGC 123719 |||| || | ||||| || |||||| ||||| ||| | ||||| | | ||| Sbjct 6406 CAGAAAAATCTTGGAACTATTAAATGTTCCAATCTCTGCACTGAAATCGTGCAGTACTCG 6465 Query 123720 GATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGAA 123779 | | ||| |||| || || || ||||| ||||||||| |||| || |||||| || Sbjct 6466 TCTCCTGATGAAGTCGCTGTTTGCAATTTAGCTTCGATTGCTCTGAACCGATGCGTCAAA 6525 >seq1186 Length=9182 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | ||||| || || ||||||||||| || || || || ||||| Sbjct 3183 TTACCAGCGAAGATAAGACGTTGTTGATCAGGCGGAATGCCCTCCTTGTCCTGGATTTTG 3242 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | ||| | ||||||||| | |||||||||||| |||| || ||||| || Sbjct 3243 GCCTTCACATTTTCGATGGTGTCGGACGCCTCGACTTCGAGCGTAATTGTCTTGCCCGTG 3302 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 |||||||| || || || |||||| Sbjct 3303 AGAGTTTTGACGAATATCTGCATC 3326 >seq10950 Length=25243 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 45193 ATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAA 45252 ||||| | || ||| | || | ||||| ||||| || || || ||||||||||| || | Sbjct 24609 ATTGTATACCGGCGAAAATAAGGCGTTGTTGGTCTGGAGGGATTCCTTCTTTATCCTGGA 24668 Query 45253 TTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 |||| |||| || | || | |||||| || ||||||||||| || | ||||| Sbjct 24669 TTTTGGCCTTGA-CGTTCTCAATGGTGTCTGACCCTTCGACTTCGAGGGTGATGGTTTTT 24727 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| || ||||| |||||||| Sbjct 24728 CCGGTCAAAGTCTTGACAAAGATTTGCAT 24756 >seq12388 Length=21549 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || ||||| ||||| || ||||| || || | ||| ||| || Sbjct 15489 ACGAGATGGAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAGGGTGCGGCCATCTTCA 15430 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || ||| | || | ||||||||||| || ||||| ||||| || ||||| Sbjct 15429 AGCTGCTTCCCGGCGAAGATAAGACGTTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGG 15370 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| |||| ||| | | || || | |||||||| || || | |||||| Sbjct 15369 ATTTTGGCCTTGACGTTTTCAATACTATCAGAGGCTTCGACTTCTAGGGTGATCGTTTTA 15310 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || |||||||| || ||||| Sbjct 15309 CCAGTGAGGGTCTTTACAAAGATCTGCAT 15281 >seq10049 Length=10599 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || ||||| ||||| || ||||| || ||| | || | || || Sbjct 9190 ACGAGGTGGAGGGTTGACTCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCGTCTTCA 9249 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || ||||| ||| | |||||||| |||||||| ||||| || ||||| || || || Sbjct 9250 AGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGCGGGATTCCTTCCTTGTCCTGG 9309 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| || | || | | | || || | |||||||||||||| | ||||| Sbjct 9310 ATCTTGGCCTTGA-CGTTCTCAATGCTATCAGAGGCTTCGACTTCGAGAGTGATGGTTTT 9368 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || || || ||||| Sbjct 9369 ACCAGTGAGGGTCTTCACGAAGATCTGCAT 9398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451922675629920