Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6327 156 5e-33 seq12754 87.8 2e-12 seq2527 84.2 3e-11 >seq6327 Length=14581 Score = 156 bits (172), Expect = 5e-33 Identities = 469/719 (65%), Gaps = 45/719 (6%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 |||||||||| |||||| ||||||| | |||||||| || | |||||| ||||||||| Sbjct 7538 TAGATGTTGGACGTGTAGGGCTCAATCGATTCATTGTTTCCAAGGATTTGAGCTGTGGAG 7479 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || || ||||| || || | ||||| ||||| || | || | | || ||| Sbjct 7478 GCCGTTGGCATTGGGGCGAGAAGAAGACTGTTACGCACTCCATGCTTCGCGATTTTCTCC 7419 Query 116023 TTGAGGGCGTCCCAGTCGTAGT----TG-----AGCTTTGTCTCCCCCTC---------C 116064 || || || |||| | | | | || || || || || || | Sbjct 7418 TTCAGAGCTACCCAATTGCACTGATCTGTAGGAAGAACTGGCTTTCCATCTTCTGTATTC 7359 Query 116065 CACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGG 116124 ||||| ||| | || || || |||||| | || || || || | |||||||| | Sbjct 7358 CACATTTCATATTGAAGAATTCCTTGGCTTACAGGAGACCCTTCGTACGTCTCATAAGTA 7299 Query 116125 CCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAA 116184 || | ||| || ||||| ||| ||||| || || | || || || || ||||| Sbjct 7298 CCATATTTCTCAGCTAATTCAGAGGATGCCTCAAGAGCACCATGGTAAATGGTTTCAAAG 7239 Query 116185 ATGC-------GAGCATTCATTGCCTTG--GCCTCGTCGGAATCAAACGCGAGACGGCA- 116234 || | ||| ||| |||| | || || |||| || || ||| Sbjct 7238 ATTCTCTTGTTGAGA--TCACGAGCTTGAGGACTAGTG-------AACG-GATACCGCAT 7189 Query 116235 CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATT 116294 ||| || || |||| || | |||||| || |||| |||||||||||||| | | | || Sbjct 7188 CAACATGAAAGCATCTGCTAAACCTTGAACTCCGATTCCAATTGGGCGATGACGCTTGTT 7129 Query 116295 AGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 116354 || || ||| || ||||| ||||| | ||||||| | || || || Sbjct 7128 TGATGTTTCAGCTTCGGGAACCGGATAGAAATTGCAGTCGATAATTTTGTTAAGGTTACG 7069 Query 116355 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT 116414 ||||||||||| || ||| ||||||||||||||||||||||| | | ||||| || Sbjct 7068 TGTGACAACCTTGGTAATTGCATGAAGCTTTTCGTAATCAAAAGTTT---TGTCTTCTTT 7012 Query 116415 GACATACTTAGGA--AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 116472 ||| | | || || || || || || | ||| || |||| | ||||| | Sbjct 7011 GACGAA--TCGGTTCAGAGCAATCGAAGCTAAATTGCAAACAGCGACTTCATCAGGAGAC 6954 Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 | ||||| | ||||||||||| | ||| |||| |||||| || || | || || ||| Sbjct 6953 GAGTACTGCACGATTTCCGTACAGAGATTGGAACACTTAATAGTTCCAAGATTTTTCTGA 6894 Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTG 116591 || |||||| | || || ||||| ||||| ||||| || || | || || || |||| Sbjct 6893 TTCGACTTTCTATTGCAAGCATCTTTGTAAAGCATGTACGGTATACCAGTTTCAATTTG 6835 Score = 109 bits (120), Expect = 7e-19 Identities = 232/341 (68%), Gaps = 9/341 (3%) Strand=Plus/Minus Query 116257 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA-CTTTCGAGCGGTCTCCAC 116315 ||||| || |||| |||||||||||||| | | | || || ||||| ||| || Sbjct 6677 CCTTGAACTCCGATTCCAATTGGGCGATGACGCTTGTTTGATCTTTC-AGCTTCGGGAAC 6619 Query 116316 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 116375 ||||| |||| | || |||| | | || || || |||| |||||| || || | Sbjct 6618 CGGATAGTAATTGCAGTCAATAATCTTGTTAAGGTTACGTGTGATAACCTTGGTAATCGC 6559 Query 116376 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGA--AGGGCG 116433 ||||||||||||||||||||| | | ||||| ||||| | | || || || Sbjct 6558 ATGAAGCTTTTCGTAATCAAAGGTTT---TGTCTTCTTTGACGCA--TCGGTTCAGAGCA 6504 Query 116434 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTA 116493 || || || | ||| || |||| | ||||| | | ||||| | ||||| || Sbjct 6503 ATCGAAGCTAAATTGCAAACAGCGACTTCATCAGGAGACGAGTACTGCACGATTTCAGTG 6444 Query 116494 CACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 116553 || | ||| |||| ||||| || || | || || || || |||||| | || || ||| Sbjct 6443 CAGAGATTGGAACATTTAATAGTTCCAAGATTTTTCTGGTTCGACTTTCTATTGCAAGCA 6384 Query 116554 TCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594 || ||||||||||| || || || || || || |||| || Sbjct 6383 TCTTTGTAGAGCATGTAAGGTGTACCAGTTTCAATTTGCGA 6343 >seq12754 Length=3330 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 175927 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 175986 ||||||||| ||| ||||| || || || ||||| ||| |||||||||||| || Sbjct 1919 ATCTTTGCCGCCCTGAAGACGTGTACCGAACTGACCGATGGGCAAAAGGAGATTGATGTT 1860 Query 175987 GTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACC 176046 ||| ||||| | ||| || | || | |||||||| || || ||| || |||||| Sbjct 1859 GTTGGAGCCAACATAATCTTGTGCGAGATTGACAATAGTGGCCATGAGAGATTGTTCACC 1800 Query 176047 GTGATGGTAGGCCGAC 176062 |||||| ||||||||| Sbjct 1799 GTGATGATAGGCCGAC 1784 >seq2527 Length=10055 Score = 84.2 bits (92), Expect = 3e-11 Identities = 249/381 (65%), Gaps = 6/381 (2%) Strand=Plus/Minus Query 127573 CAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAA 127632 || ||| ||||| || || || ||||||| ||| ||||| ||| ||| ||||||||||| Sbjct 5510 CAAACCCGGCATAAGTCCACGTTTCTTCAGCCAAAAAATTGCAGCAAACGAGCCAGAGAA 5451 Query 127633 GAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT 127692 ||||| || ||||| || || |||| | |||| |||| || ||| | Sbjct 5450 AAAGATTCCTTCCACTGCAGCAAATGCAACAACACGCATCCCAAATGAAGCATTCTTATT 5391 Query 127693 ATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 |||| ||| | || | ||| | ||| || || | ||| | || | | || || || Sbjct 5390 TTCAATCCATTGAATTGTCCAATCTGCTTTCTTTTTTATATACGGAAAGTCGTGAATTGC 5331 Query 127753 TTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATA 127812 | |||||| || | ||| |||||| || |||||| | || || | ||| ||||| Sbjct 5330 GTTGAAGAGTGTATTTTGTTCGACTGGATCGTTAATGTACGTTTCGATCAATTTCGAATA 5271 Query 127813 TGTTTCGCCGTGGA-CCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTC 127869 |||| ||| | | || || | ||| |||| | |||||||||| | || || Sbjct 5270 CATTTCAGAGTGAATTCCTTCCACT---GCAATCTGAAAATTGTAGAAAGAGAGTGCCTC 5214 Query 127870 GCTTATCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGA 127929 |||| || || | | |||| | ||| ||| ||| || |||||||| || Sbjct 5213 AGGCATCTTCACTTCTTGTGTAAAACGTCCAATGAGATTTTCATTTACGATTCCATCTGA 5154 Query 127930 CCCAGCAAAAAACGCCAGGAT 127950 | |||||||| || || || Sbjct 5153 AGCTGCAAAAAATGCAAGAAT 5133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613397903692320