Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq7750 132 5e-26 seq10049 123 3e-23 seq8226 107 2e-18 seq12388 87.8 2e-12 >seq7750 Length=8304 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||| |||| |||||| || |||||| || || ||||| ||||| Sbjct 1497 CCTCCACGGAGACGCAGAACCAAATGCAAGGTGGACTCCTTCTGAATGTTGTAATCGGAG 1556 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || |||| ||||| ||||| |||||||| |||||||||||||| || | ||| Sbjct 1557 AGTGTACGACCGTCCTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGCGGA 1616 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| ||| |||||| ||||| || | | |||||| | ||| || Sbjct 1617 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGATGCTTCAACT 1676 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| ||||| || || || || || || ||||| ||||| |||||| Sbjct 1677 TCCAGAGTGATTGTCTTTCCGGTGAGGGTCTTAACGAAGATCTGCATT 1724 Score = 123 bits (136), Expect = 3e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || ||||||||| | || ||||||||||| |||||||| Sbjct 1030 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGCCCATCTTCGAGCTGCTTTCCGGCGAA 1089 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || ||||| || | || | | ||||| ||| |||||| ||||| | Sbjct 1090 GATCAACCGTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATT 1149 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || ||| || || | ||||||||||| || || || || || || Sbjct 1150 TTCGATTGTGTCGGACGCTTCGACCTCAAGAGTGATGGTTTTTCCGGTGAGTGTCTTGAC 1209 Query 46582 AAAGATTTGCATT 46594 ||||| |||||| Sbjct 1210 GAAGATCTGCATT 1222 Score = 118 bits (130), Expect = 1e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||||| ||||| || |||| || |||||||| |||||||| Sbjct 802 CTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGACCGTCTTCAAGCTGCTTTCCGGCGAA 861 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||||||| ||||| || | || | | || |||||| |||||| ||||| | Sbjct 862 GATCAAGCGTTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATT 921 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || ||| || || | ||||||||||| || || || || || || Sbjct 922 TTCGATTGTGTCGGACGCTTCGACCTCAAGAGTGATGGTTTTTCCGGTGAGTGTCTTGAC 981 Query 46582 AAAGATTTGCATT 46594 ||||| |||||| Sbjct 982 GAAGATCTGCATT 994 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| ||||| || ||||||||||| ||||| || |||| || |||||||| |||||||| Sbjct 2745 CTCTTTTTGAATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCAAGCTGCTTTCCGGCGAA 2804 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||| ||||| | || | | ||||||||| |||||| ||| | | Sbjct 2805 GATCAAACGCTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTT 2864 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | ||| || || | || ||||| || || || || || || || Sbjct 2865 CTCGATTGTGTCAGAGGCTTCTACCTCGAGGGTAATGGTCTTTCCAGTAAGAGTCTTCAC 2924 Query 46582 AAAGATTTGCAT 46593 |||||||||||| Sbjct 2925 AAAGATTTGCAT 2936 >seq10049 Length=10599 Score = 123 bits (136), Expect = 3e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || |||||||||||||| ||||| || |||| || |||||||| |||||||| Sbjct 9207 CTCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCGTCTTCAAGCTGCTTTCCGGCGAA 9266 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | ||| | | ||||||||| |||||| ||||| | Sbjct 9267 GATCAATCGCTGCTGGTCTGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 9326 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | | || | ||| || || | ||||||||||| || || || || || || Sbjct 9327 CTCAATGCTATCAGAGGCTTCGACTTCGAGAGTGATGGTTTTACCAGTGAGGGTCTTCAC 9386 Query 46582 AAAGATTTGCATTTTG 46597 ||||| ||||| ||| Sbjct 9387 GAAGATCTGCATGTTG 9402 >seq8226 Length=1064 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || |||||||| || || || ||||| | || || | ||| || |||||||| Sbjct 821 CTCCTTCTGAATATTGTAATCAGAAAGGGTGCGGCCATCTTCCAACTGTTTTCCGGCGAA 880 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | || |||||||||| ||||| ||||| ||| Sbjct 881 GATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGT 939 Query 46522 CGCCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 || | | || | ||| || || | ||||| ||||| || |||| ||| || | Sbjct 940 TTTCAATGCTATCAGAGGCTTCGACTTCGAGAGTGATTGTTTTACCAGTCAACGTCTTGA 999 Query 46581 CAAAGATTTGCAT 46593 ||||||||||||| Sbjct 1000 CAAAGATTTGCAT 1012 >seq12388 Length=21549 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || ||||||||||| ||||| ||||| | || || |||||||| |||||||| Sbjct 15472 CTCCTTCTGAATATTGTAGTCAGATAGGGTGCGGCCATCTTCAAGCTGCTTCCCGGCGAA 15413 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || |||||||| | || | | |||||||| ||| || ||||| | Sbjct 15412 GATAAGACGTTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATTTTGGCCTTGACGTT 15353 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || | ||| || || | ||||| ||||| || || || || || || Sbjct 15352 TTCAATACTATCAGAGGCTTCGACTTCTAGGGTGATCGTTTTACCAGTGAGGGTCTTTAC 15293 Query 46582 AAAGATTTGCATTTTG 46597 |||||| ||||| ||| Sbjct 15292 AAAGATCTGCATGTTG 15277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565137702779040