Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq10970 154 1e-31 seq2587 105 5e-17 seq2046 100 2e-15 >seq10970 Length=20071 Score = 154 bits (170), Expect = 1e-31 Identities = 318/468 (68%), Gaps = 4/468 (1%) Strand=Plus/Plus Query 517419 CAGTTTGATTATCTGAATAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTG 517477 ||| ||| || || |||||||| || || | |||| || | || ||||| || || Sbjct 13328 CAGGTTGGTTGTCCGAATAAGTCGTGAA-AGTCTGCGAAGTCTTTGTGGGAATGGTAGTA 13386 Query 517478 TTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGA 517537 || | | ||| | |||||||| ||||| |||||||| | ||| || ||||||||| Sbjct 13387 TTGCGTTTAATGAGCGCGGTCATAACGCCACCAGCTGTTTCGATACCGAGCGAAAGAGGA 13446 Query 517538 GTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCT 517597 | |||||||| || | | || || | ||| | | ||| ||| ||||| Sbjct 13447 GCGACATCAAGAAGAAGGAGATCCTGGACGGCTTCGCTTTTGTCACCGGAAAGGATAGCG 13506 Query 517598 GCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTT 517657 ||||| | || ||||| || |||||||||||||||||||| | ||| || |||| Sbjct 13507 GCTTGGACGGCGGCACCGTAGGCAACAGCTTCATCAGGATTGATGCTTTTGTTCAGTTCC 13566 Query 517658 TTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCA 517717 || || ||| |||| |||||||||| | ||||| ||||| |||| |||||||| Sbjct 13567 TTGCCGGAGAAGAAATCAGAAAGAAGTTTTTGAACCTTGGGAATGCGAGTCGATCCTCCG 13626 Query 517718 ACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCA 517777 ||||| || || || || || || || || |||| || | ||| | | | ||||| Sbjct 13627 ACTAAGACGATATCGTGGACTTGAGACTTGTCCATCTTAGCATCGCGAAGAGCCTTTTCG 13686 Query 517778 ACGGGTTCAAGACCCGCT-CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGT 517836 ||||| || | | | | | || | || | ||||||||||||||| || | ||| Sbjct 13687 ACGGGATCCA-TCGTGTTGCGGAAGAGATCAGCACAAAGTTCTTCGAAACGGGCGCGAGT 13745 Query 517837 AAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 517884 | | | | | | ||||| || ||||| | ||||||| |||||| Sbjct 13746 GATATTTGTGTAAAAGTCAATGCCATCGAAGAGTGAATCAATTTCAAT 13793 Score = 95.1 bits (104), Expect = 9e-14 Identities = 193/287 (67%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 518020 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 518079 |||||| || ||||||||||| || | | || | || | || | | |||| || Sbjct 13975 ACGATTGTCGAAATCTTCACCACCAAGATGGGTGTCGCCAGCAGTGGACTTGACTTCAAA 14034 Query 518080 AAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAAT 518139 | ||| ||||| | | || | | |||||| |||||||| || | ||||||||| Sbjct 14035 GATTCCGTCTTCGATGGTCAGGATTGAAACATCAAAAGTTCCACCGCCGAGATCAAAAAT 14094 Query 518140 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 518199 ||| || || |||| || || || || | ||||| |||| ||| |||||||| Sbjct 14095 AAGGACGTTGCGTTCTCCGTGACCTTTCTTGTCCAATCCATAAGCAATAGCTGCAGCAGT 14154 Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 |||||||||||||| | | || || || ||||| || || ||||| || || || Sbjct 14155 CGGTTCATTAATAATACGGAGGACGTTGAGTCCAGCGATGGCACCGGCATCCTTTGTAGC 14214 Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 ||| | || || | || || || ||||| |||| ||||||| Sbjct 14215 TTGACGCTGACTGTCAGTGAAGTACGCGGGAACGGTAACGACGGCAT 14261 >seq2587 Length=10480 Score = 105 bits (116), Expect = 5e-17 Identities = 311/472 (66%), Gaps = 12/472 (3%) Strand=Plus/Minus Query 517419 CAGTTTGATTATCTGAATAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTG 517477 ||| ||| || || |||||||| || || |||| || | ||| ||||| || ||| Sbjct 2444 CAGGTTGGTTGTCAGAATAAGTCGTGAAGG-TCTGTGAAGTCTTAGTGGGAATGGTAGTG 2386 Query 517478 TTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGA 517537 || | | || | ||||| | |||||| || ||||| | || || ||||| ||| Sbjct 2385 TTCCGCTTGATGAGCGCAGTCATTACACCACCAGCAGTTTCAATGCCGAGCGAAAGTGGA 2326 Query 517538 GTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCT 517597 | ||| |||| |||| || || || | || | | ||| || ||||| Sbjct 2325 GCGACGTCAAGAAGGAGAAGATCCTGGACGGCCTCGCTTTTGTCACCGGAGAGGATAGCG 2266 Query 517598 GCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTT 517657 || || | ||| ||||| || || |||||||||||||| || | ||| || |||| Sbjct 2265 GCCTGGACAGCTGCACCGTACGCGACAGCTTCATCAGGGTTTATGCTTTTGTTGAGTTCC 2206 Query 517658 TTACCATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCC 517716 || ||| ||| || | || ||||| | ||| ||||| || ||||| | || ||||| Sbjct 2205 TTTCCAGAGAAGAAGTCGGAGAGAAGCT-TCTGGACCTTGGGGATACGGGTGGACCCTCC 2147 Query 517717 AACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTC 517776 ||| || ||||| || || | ||| ||||| |||| || | || | ||||| Sbjct 2146 AACCAAGACAATGTCGTGGATCTGGGATTTGTCCATCTTGGCGTCACGGAGCGACTTTTC 2087 Query 517777 AACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGT 517836 ||||| || | | |||||||| | ||| ||||||||||| ||| | || Sbjct 2086 GACGGGGTCCATGGTGTTGCGGAACAAGTCGGCACAGAGTTCTTCGAAACGAGCACGGGT 2027 Query 517837 AA---GAGTGACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAAT 517884 | |||| || || || ||||| ||||||||||| || | |||||| Sbjct 2026 GATGCTAGTG----TAGAAGTCGATTCCATCGAACAAAGAGTCTATTTCAAT 1979 >seq2046 Length=20600 Score = 100 bits (110), Expect = 2e-15 Identities = 218/317 (69%), Gaps = 12/317 (4%) Strand=Plus/Minus Query 517475 GTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGA 517534 ||||| | || |||| || ||||| || || || || ||||| | ||||||||||| Sbjct 7799 GTGTTACGGTCGATAAGGTTTGTCATCATTCCGCCAGCAGTTTCGATGCCAAGAGAAAGC 7740 Query 517535 GGAGTGACATCAACTAGGACAATATT-TTGAAGTTTTTCATCAGTTTGACCAACAAGA-- 517591 |||| || || || || | | | |||| || ||| ||||| ||| Sbjct 7739 GGAGCAACGTCCACGAGAAGCACGTCCTTGACAACCTT-ATCC--TTGACTCCGGAGAGG 7683 Query 517592 ATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTT 517651 |||||||| ||||| || ||||| || || || ||||| |||||||| | | || Sbjct 7682 ATAGCTGCCTGAATCGCTGCACCGTAGGCGACCGCTTCGTCAGGATTGATGGAGCAGTTG 7623 Query 517652 AGTTTTTTACCATTGAAAAAAT--TTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGAT 517708 || | | | |||||||| || | |||| |||| | ||| | || ||||| |||| Sbjct 7622 AGATCTCTGCCATTGAAGAACTCCTTGA--GAAGCT-TCTGGATTTTCGGAATTCGAGTA 7566 Query 517709 GATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAA 517768 || |||||||| | ||||||||||| | ||| ||||| ||||||| | ||| |||| Sbjct 7565 GAGCCTCCAACGAGCACAATTTCATGAATCTGAGATTTGCCCAGTTTGGCATCGGTTAAA 7506 Query 517769 ACTTTTTCAACGGGTTC 517785 | || || |||||||| Sbjct 7505 GCCTTCTCGACGGGTTC 7489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780115168813912