Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq10970 268 1e-66 seq14176 174 2e-38 seq2587 141 1e-28 seq4842 102 1e-16 seq6327 91.5 2e-13 >seq10970 Length=20071 Score = 268 bits (296), Expect = 1e-66 Identities = 632/962 (66%), Gaps = 48/962 (5%) Strand=Plus/Plus Query 6888 TCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTT 6947 |||| | ||||| || ||||| | ||| | || |||||||| ||||| |||| Sbjct 13367 TCTTTGTGGGAATGGTAGTATTGCGTTTAATGAGCGCGGTCATAACGCCACCAGCTGTTT 13426 Query 6948 CGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCC 7007 ||| || || || ||||| | || || | || | || || || || | |||| | Sbjct 13427 CGATACCGAGCGAAAGAGGAGCGACATCAAGAAGAAGGAGATCCTGGACGGCTTCGCTTT 13486 Query 7008 CTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGT 7067 ||||| | | ||| ||||||||||| | || ||||| || || || ||||| || | Sbjct 13487 TGTCACCGGAAAGGATAGCGGCTTGGACGGCGGCACCGTAGGCAACAGCTTCATCAGGAT 13546 Query 7068 TAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCG 7127 | || |||| |||||||| || ||| || |||| || | | || ||||| || | Sbjct 13547 TGATGCTTTTGTTCAGTTCCTTGCCGGAGAAGAAATCAGAAAGAAGTTTTTGAACCTTGG 13606 Query 7128 GGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTG 7187 | || || |||||||| ||||| || ||||| || | |||| || || || ||||| | Sbjct 13607 GAATGCGAGTCGATCCTCCGACTAAGACGATATCGTGGACTTGAGACTTGTCCATCTTAG 13666 Query 7188 AGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTT 7247 || ||||| | |||||||| || ||||| || ||||| | || ||| |||| Sbjct 13667 CATCGCGAAGAGCCTTTTCGACGGGATCCATCGTGTTGCGGAAGAGATCAGCACAAAGTT 13726 Query 7248 CCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAA 7307 | || ||||| || || || || ||| || || |||| ||| ||| | | ||||||| Sbjct 13727 CTTCGAAACGGGCGCGAGTGATATTTGTGTAAAAGTCAATGCCATCGAAGAGTGAATCAA 13786 Query 7308 TTTCAATGGT-----------------------------TGTTTGTGCCGTC-------- 7330 ||||||| | | ||||||| | Sbjct 13787 TTTCAATACTAAAATCAAGCACTCAGTGATTAGAATAATTATTTGTGCAATTACCTGGCC 13846 Query 7331 ---GAAGATAACG------TTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 ||||| || ||||||| ||||| || || || || || | ||| ||||| Sbjct 13847 TGAGAAGAGCTCGAAAGAGTTCGCTTAGCGCGTTCGCAAGCAGTGCGAAGACGGCGAAGA 13906 Query 7382 GCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGT 7441 ||||| | ||| | || ||| ||||| || ||||| || ||||| || ||||| Sbjct 13907 GCACGTGCGTTGGTAGCAAGATCCTTCTTGTGCTTACGCTTGAACTCAGCAACAAAGTGA 13966 Query 7442 CGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTG 7501 || | | ||||||||||||||||| | || || || || || || | ||| Sbjct 13967 TTAACCATACGATTGTCGAAATCTTCACCACCAAGATGGGTGTCGCCAGCAGTGGACTTG 14026 Query 7502 ACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGG 7561 ||||||||||| || |||| ||| | | | ||||||||||| || ||||| || || Sbjct 14027 ACTTCAAAGATTCCGTCTTCGATGGTCAGGATTGAAACATCAAAAGTTCCACCGCCGAGA 14086 Query 7562 TCAAAAATGAGTACGTT-CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGC 7620 |||||||| || ||||| ||| || ||| ||||| || | || || || ||||| Sbjct 14087 TCAAAAATAAGGACGTTGCGT-TCTCCGTGACCTTTCTTGTCCAATCCATAAGCAATAGC 14145 Query 7621 CGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATC 7680 || || || ||||||||||||||||| || ||| || ||||| || | | ||||| Sbjct 14146 TGCAGCAGTCGGTTCATTAATAATACGGAGGACGTTGAGTCCAGCGATGGCACCGGCATC 14205 Query 7681 TTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGT 7740 || || ||||| || || || | ||||| || || || || ||||| || | | Sbjct 14206 CTTTGTAGCTTGACGCTGACTGTCAGTGAAGTACGCGGGAACGGTAACGACGGCATTTTT 14265 Query 7741 GACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGA 7800 ||| | ||| || | | ||| || | || ||||| ||| | | ||||||||| || Sbjct 14266 GACCTCAGAACCCAGGAAGGCTTCAGCAGTCTCCTTCATCTTGATCAAAACCATCGAAGA 14325 Query 7801 AA 7802 || Sbjct 14326 AA 14327 >seq14176 Length=25924 Score = 174 bits (192), Expect = 2e-38 Identities = 324/473 (68%), Gaps = 6/473 (1%) Strand=Plus/Plus Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| ||||| || || || || || | |||||| || || || ||||| | || Sbjct 12243 GTGCGCTTGGCGCGTTCGCAGGCGGTGCGGAGACGACGGAGAGCGCGGGGGTTGCTGGCG 12302 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAA 7456 | || ||||| || || || || || || | |||||| | || | | | | Sbjct 12303 AGGTCCTTCTTGTGCTTGCGCTTGAATTCGGCGACGAAGTGGTTGACCATGCGGTTG--- 12359 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||| || || | || || || || ||||||| |||||||| |||||||| Sbjct 12360 TCGAAATCTTCTCCTCCGAGATGAGTGTCACCAGCGGTCGACTTGACTTCGAAGATACCG 12419 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||| ||| | || | |||||||| || |||||||| || || || || ||||| ||| Sbjct 12420 TCTTCGATGGTCAAGATGGAAACATCGAAGGTACCACCTCCAAGATCGAAGATGAGGACG 12479 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | ||||| || | |||||| |||||||| || || || || || Sbjct 12480 TTGCGCTCGCCCGAAGCCTTCTTGTCCAAACCGTAAGCGATAGCAGCGGCGGTAGGCTCG 12539 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| || || || || | | || || || || || || || Sbjct 12540 TTGATGATACGGAGGACGTTGAGTCCGGCGATGGCACCAGCGTCCTTGGTAGCCTGACGC 12599 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||||| |||||||| ||||| || || || || ||| |||| | ||||| Sbjct 12600 TGAGAGTCGTTGAAGTAGGCGGGGACGGTGACAACGGCATCCTTGACGGAGCTTCCGAGG 12659 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 | | || ||| | || ||||| ||| | || | ||| | |||| |||||| Sbjct 12660 AAAGCCTCGGCGGTCTCCTTCATCTTGATGAGGATCATGGCGGAAACCTCTTC 12712 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/191 (71%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 || || ||||| | ||||||||||| |||||||| || || || ||||| ||||| Sbjct 12910 AAGACGGTGTTGATAGGGTTCATGGCGACCTGGTTCTTGGCGGCATCTCCGATGAGACGC 12969 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || ||| | || || || || ||||| || || || || || ||||||||||| || Sbjct 12970 TCGGTATCT---GTGAAAGCAACATACGAAGGAGTGGTACGGTTGCCTTGGTCGTTGGCG 13026 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCA 8137 |||||||| || ||| | || || |||||||| || || ||||| | ||| Sbjct 13027 ATAATTTCGACCTTTCCGTGCATAAACACACCCACGCACGAGTAGGTGGTTCCGAGATCG 13086 Query 8138 ATACCGATTGC 8148 ||||| || || Sbjct 13087 ATACCAATAGC 13097 >seq2587 Length=10480 Score = 141 bits (156), Expect = 1e-28 Identities = 288/428 (67%), Gaps = 0/428 (0%) Strand=Plus/Minus Query 6888 TCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTT 6947 |||||| ||||| || || || | | || | || ||||| | |||||| ||||| Sbjct 2405 TCTTAGTGGGAATGGTAGTGTTCCGCTTGATGAGCGCAGTCATTACACCACCAGCAGTTT 2346 Query 6948 CGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCC 7007 | | || || || || || | ||||| | || | || || || || | ||| | Sbjct 2345 CAATGCCGAGCGAAAGTGGAGCGACGTCAAGAAGGAGAAGATCCTGGACGGCCTCGCTTT 2286 Query 7008 CTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGT 7067 ||||| | | ||| ||||| ||||| | || ||||| ||||| || ||||| |||| Sbjct 2285 TGTCACCGGAGAGGATAGCGGCCTGGACAGCTGCACCGTACGCGACAGCTTCATCAGGGT 2226 Query 7068 TAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCG 7127 | || |||| || ||||| || || || | || || | | | || | || | Sbjct 2225 TTATGCTTTTGTTGAGTTCCTTTCCAGAGAAGAAGTCGGAGAGAAGCTTCTGGACCTTGG 2166 Query 7128 GGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTG 7187 |||| || || || || || ||||| || || || | | | ||||| || ||||| | Sbjct 2165 GGATACGGGTGGACCCTCCAACCAAGACAATGTCGTGGATCTGGGATTTGTCCATCTTGG 2106 Query 7188 AGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTT 7247 ||| || || | |||||||| || ||||| || ||||||||||| ||| |||| Sbjct 2105 CGTCACGGAGCGACTTTTCGACGGGGTCCATGGTGTTGCGGAACAAGTCGGCACAGAGTT 2046 Query 7248 CCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAA 7307 | || ||||| |||||||| ||| || ||||| || | || ||| | || || || | Sbjct 2045 CTTCGAAACGAGCACGGGTGATGCTAGTGTAGAAGTCGATTCCATCGAACAAAGAGTCTA 1986 Query 7308 TTTCAATG 7315 |||||||| Sbjct 1985 TTTCAATG 1978 >seq4842 Length=730 Score = 102 bits (112), Expect = 1e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 7124 TTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATC 7183 || ||||| || || ||||| |||||||| || || || | | || ||||| || || Sbjct 720 TTGGGGATACGGGTGGATCCTCCGACCAAGACAATGTCGTCGATCTTGGATTTGTCCATT 661 Query 7184 TTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACAC 7243 || | ||| ||||| | || || ||||| ||||| |||||||||||||| ||| Sbjct 660 TTGGCGTCACGAAGCGCCTTCTCTACAGGGTCCATGGTGTTACGGAACAAGTCAGCACAG 601 Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATC 7284 || ||||||||||| |||||||| ||| || ||||| || Sbjct 600 AGCTCCTCAAAACGAGCACGGGTGATGTTGGTGTAGAAGTC 560 >seq6327 Length=14581 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 105284 ACTCCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCG 105343 ||| || ||||| || || | ||| || ||||||| || |||| | ||| ||||||| Sbjct 6460 ACTGCACGATTTCAGTGCAGAGATTGGAACATTTAATAGTTCCAAGATTTTTCTGGTTCG 6401 Query 105344 ACTTTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATT 105403 ||||| ||| || || |||||||| ||||| || || || || |||||| |||| ||| Sbjct 6400 ACTTTCTATTGCAAGCATCTTTGTAGAGCATGTAAGGTGTACCAGTTTCAATTTGCGATG 6341 Query 105404 TAATAATTGCTTTCCAAA 105421 ||| ||| | | ||||| Sbjct 6340 TAACGATTTCCTCCCAAA 6323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635019651091680