Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq6327 116 4e-21 >seq6327 Length=14581 Score = 116 bits (128), Expect = 4e-21 Identities = 236/344 (69%), Gaps = 11/344 (3%) Strand=Plus/Minus Query 110102 CATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAG 110161 |||| |||| ||| ||||| |||| ||||| |||||||| | |||| || | || Sbjct 7177 CATCTGCTAAACCTTGAACTCCGATTCCAATTGGGCGATGACGCTTGTTTGATGTTTCAG 7118 Query 110162 CAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAG 110218 | ||| || || || || |||| |||||| | || || || || ||| Sbjct 7117 C---TTCGGGAACCGGATAGAAATTGCAGTCGATAATTTTGTTAAGGTTACGTGTGACAA 7061 Query 110219 TCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATT 110278 ||| || ||| |||| || || |||||||| || ||||| |||| ||| |||| || Sbjct 7060 CCTTGGTAATTGCATGAAGCTTTTCGTAATCAAAAGTTTT-GTCTTCTT--TGACGAATC 7004 Query 110279 TGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCA 110338 | |||||||| || || | |||||| |||| || || | ||| | || Sbjct 7003 GGTTCAGAGCAATCGAAGCTAAATTGCAAACAGCGACTTCATCAGGAGACGAGTACTGCA 6944 Query 110339 AAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAG-TTCTTCTGATTCGATTTG 110397 ||||||||||| | ||||||| |||||| | ||||| || ||||||||||| || Sbjct 6943 CGATTTCCGTACAGAGATTGGAACACTTAAT-AGTTCCAAGATTTTTCTGATTCGACTTT 6885 Query 110398 GAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTC 110441 ||||| ||||| || || |||||||| || |||||||||| Sbjct 6884 CTATTGCAAGCATCTTTGTAAAGCATGTACGGTATACCAGTTTC 6841 Score = 102 bits (112), Expect = 1e-16 Identities = 234/350 (67%), Gaps = 18/350 (5%) Strand=Plus/Minus Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGG 109566 ||||| ||||| || ||||| ||||| ||||| ||||| || |||||| |||||| Sbjct 8313 GACTGCGACTGGTCAATGAAGGCCCCACGGTCAGCAGCCATTTCAATGATATCCTTTTGA 8254 Query 109567 CTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTT 109626 ||||||||| ||||||||||||| || | | || | ||||| || |||| | Sbjct 8253 GAAATTTCCCATACAGTCTTGTACAGGTTTTGCAAGTCCTTTGGAATTTCAGCGATTCCT 8194 Query 109627 TGAATAGAGCCACCAGCCTTCACCATGAG---ATCCTTCA---TCTCTTTCGACCAG--- 109677 || || || |||| || | | |||| || |||| | || ||| | || Sbjct 8193 TGGATCGATCCACT---CTGCGCAATGATTCTATTTTTCAGATTGTCGTTCCATAAGTTA 8137 Query 109678 AGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCA 109737 || | || |||||| | | ||||| || || | |||||||| | Sbjct 8136 AGTTCAAC------GAGATCCTTCAGCAGATGGGGATTAACAATTTGGAATTCACCGGAT 8083 Query 109738 AGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGG 109797 | |||||| |||||||| | ||||||||| |||| | |||||||| || || Sbjct 8082 AAAACGCGTCGAGTATAGATGTTGGACGTGTAGGGCTCGATCGATTCATTGTTTCCCAGA 8023 Query 109798 ATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCG 109847 ||||| || |||||||| || ||||| || || | ||||||||||| || Sbjct 8022 ATTTGAGCTGTGGAAGCCGTTGGCATTGGGGCGAGAAGAAGACTGTTACG 7973 Score = 87.8 bits (96), Expect = 2e-12 Identities = 223/333 (67%), Gaps = 11/333 (3%) Strand=Plus/Minus Query 110113 CCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCT--- 110169 || ||||| |||| ||||| |||||||| | |||| || | | ||| ||| Sbjct 6677 CCTTGAACTCCGATTCCAATTGGGCGATGACGCTTGTTTGATCTTTCAGC---TTCGGGA 6621 Query 110170 ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATT 110229 || || || | |||| ||| || | | || || || || | | ||| || || Sbjct 6620 ACCGGATAGTAATTGCAGTCAATAATCTTGTTAAGGTTACGTGTGATAACCTTGGTAATC 6561 Query 110230 TCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCA 110289 |||| || || |||||||| || ||||| |||| ||| |||| || | |||||| Sbjct 6560 GCATGAAGCTTTTCGTAATCAAAGGTTTT-GTCTTCTT--TGACGCATCGGTTCAGAGCA 6504 Query 110290 ATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTA 110349 || || || | |||||| |||| || || | ||| | || ||||| || Sbjct 6503 ATCGAAGCTAAATTGCAAACAGCGACTTCATCAGGAGACGAGTACTGCACGATTTCAGTG 6444 Query 110350 CACAAGTTGGAACTCTTAATGACACCCAAG-TTCTTCTGATTCGATTTGGAGTTGCATGC 110408 || | ||||||| ||||| | ||||| || ||||| ||||| || ||||| || Sbjct 6443 CAGAGATTGGAACATTTAAT-AGTTCCAAGATTTTTCTGGTTCGACTTTCTATTGCAAGC 6385 Query 110409 ATCCTTATAGAGCATGTATGGGGTACCAGTTTC 110441 ||| || ||||||||||| || ||||||||||| Sbjct 6384 ATCTTTGTAGAGCATGTAAGGTGTACCAGTTTC 6352 Score = 82.4 bits (90), Expect = 9e-11 Identities = 180/270 (67%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 110886 ACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACC 110945 |||||||||||| || |||| ||| | ||||||| ||| || ||||| || Sbjct 4433 ACCAATACCACCTGCTGACTTCGAAATAAGGGCACACTGCCAGAGAGTTTTGTAAATCCC 4374 Query 110946 ATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGT 111005 |||||| ||||| | | | | | || |||||||| ||| || || || Sbjct 4373 ATCAATTGAATCGTCATGCATCGTCAGGAGGAAGCAAGAGCTCATTTGTGGTTTGCAAGT 4314 Query 111006 TCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTA 111065 ||| |||||||| |||||||| | |||||| ||||| | | ||||||| ||||| Sbjct 4313 TCCTGCATTGAAAAGTGTAGGAGAAGCATGAGTGAACCAGCGCTCGGACATCAAATTGTA 4254 Query 111066 TGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACAT 111125 || |||| |||| | ||||| |||||| |||| || || ||||| | || Sbjct 4253 GGTTTCGATAGCGGCATCGATATCTTCCTTGTGAATTCCAACAGCGACACGCATAAGCAA 4194 Query 111126 ATATTGAGGCGTTTCGATTAGCTTTCCATC 111155 || |||||| |||| | || |||||| Sbjct 4193 ATGTTGAGGACGCTCGACAACCTGTCCATC 4164 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 109743 GCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTG 109802 |||||| ||||||||| | ||||||||| || | | |||||||| || |||||||| Sbjct 7548 GCGTCGACTGTAGATGTTGGACGTGTAGGGCTCAATCGATTCATTGTTTCCAAGGATTTG 7489 Query 109803 TGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCG 109847 || ||||| || || ||||| || || | ||||||||||| || Sbjct 7488 AGCTGTGGAGGCCGTTGGCATTGGGGCGAGAAGAAGACTGTTACG 7444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588871073925600