Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6327 179 4e-40 seq2468 98.7 1e-15 >seq6327 Length=14581 Score = 179 bits (198), Expect = 4e-40 Identities = 458/694 (66%), Gaps = 31/694 (4%) Strand=Plus/Minus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 |||||||| | ||||||||| |||| ||||||| || || | |||||| || |||||| Sbjct 7538 TAGATGTTGGACGTGTAGGGCTCAATCGATTCATTGTTTCCAAGGATTTGAGCTGTGGAG 7479 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054 || ||||||||||| || | | |||||||||||| | || | | | ||| ||| Sbjct 7478 GCCGTTGGCATTGGGGCGAGAAGAAGACTGTTACGCACTCCATGCTTCGCGATTTTCTCC 7419 Query 106055 TTGAGAACATCCCAGTCGTAGTT-----------GAGCTTGGTTTC-ACCTTC------C 106096 || ||| | |||| | | | | || || | |||| | |||| | Sbjct 7418 TTCAGAGCTACCCAATTGCACTGATCTGTAGGAAGAACTGGCTTTCCATCTTCTGTATTC 7359 Query 106097 CACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAA 106156 ||||| ||| ||||||| | |||||| ||||| || || | |||||||| | | Sbjct 7358 CACATTTCATATTGAAGAATTCCTTGGCTTACAGGAGACCCTTCGTACGTCTCATAAGTA 7299 Query 106157 CCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAG 106216 || | ||||| |||||| || ||||| || | | || || |||||||||||| Sbjct 7298 CCATATTTCTCAGCTAATTCAGAGGATGCCTCAAGAGCACCATGGTAAATGGTTTCAAAG 7239 Query 106217 ATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAAT 106276 || | || | || |||| | | || | || || ||| || || Sbjct 7238 ATTCTCTTGTTGAGATCACGAGCTTGAGGACTAGTGAACGGATACCGCATCAACATGAAA 7179 Query 106277 ACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGC 106336 |||| || | ||||||||| || | ||||| || | || ||| | || || || Sbjct 7178 GCATCTGCTAAACCTTGAACTCCGATTCCAATTGGGCGATGACGCTTGTTTGATGTTT-- 7121 Query 106337 GCAGTCTC---AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACA 106393 ||| || ||| ||||| ||||| | ||| || | | ||| || || || ||| Sbjct 7120 -CAGCTTCGGGAACCGGATAGAAATTGCAGTCGATAATTTTGTTAAGGTTACGTGTGACA 7062 Query 106394 ATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATAC 106453 | ||| || ||| ||||||| ||||| ||||||||||| | ||||| ||||| | Sbjct 7061 ACCTTGGTAATTGCATGAAGCTTTTCGTAATCAAAAGTTT---TGTCTTCTTTGACGAA- 7006 Query 106454 TTTGGA--AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 106511 | || || || || || || |||||||||||||| ||||| | | ||||| Sbjct 7005 -TCGGTTCAGAGCAATCGAAGCTAAATTGCAAACAGCGACTTCATCAGGAGACGAGTACT 6947 Query 106512 CTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCT 106571 | ||||| ||||| | ||||||| |||||| || || | ||| || || || || Sbjct 6946 GCACGATTTCCGTACAGAGATTGGAACACTTAATAGTTCCAAGATTTTTCTGATTCGACT 6887 Query 106572 TTTTGTTGCACGCATCCTTGTAGAGCATGTAGGG 106605 || | ||||| ||||| ||||| |||||||| || Sbjct 6886 TTCTATTGCAAGCATCTTTGTAAAGCATGTACGG 6853 Score = 104 bits (114), Expect = 3e-17 Identities = 227/335 (68%), Gaps = 15/335 (4%) Strand=Plus/Minus Query 106289 CCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCTC--- 106344 |||||||| || | ||||| || | || ||| | || || ||||| || || Sbjct 6677 CCTTGAACTCCGATTCCAATTGGGCGATGACGCTTGTTTGATCTTTC----AGCTTCGGG 6622 Query 106345 AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGAT 106404 ||| ||||| |||| | |||||| | ||| || || || | || ||| || || Sbjct 6621 AACCGGATAGTAATTGCAGTCAATAATCTTGTTAAGGTTACGTGTGATAACCTTGGTAAT 6562 Query 106405 TTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA--AGG 106462 ||||||| ||||| |||||||| || | ||||| ||||| | | || || Sbjct 6561 CGCATGAAGCTTTTCGTAATCAAAGGTTT---TGTCTTCTTTGACGCA--TCGGTTCAGA 6507 Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 || || || || |||||||||||||| ||||| | | ||||| | ||||| Sbjct 6506 GCAATCGAAGCTAAATTGCAAACAGCGACTTCATCAGGAGACGAGTACTGCACGATTTCA 6447 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 || || | ||||||| ||||| || || | ||| || ||||| |||| | ||||| Sbjct 6446 GTGCAGAGATTGGAACATTTAATAGTTCCAAGATTTTTCTGGTTCGACTTTCTATTGCAA 6387 Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 106617 ||||| |||||||||||||| || || || || || Sbjct 6386 GCATCTTTGTAGAGCATGTAAGGTGTACCAGTTTC 6352 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993 ||||||||| | ||||||||| || | ||||||| || |||| ||||| || ||||| Sbjct 8068 ATAGATGTTGGACGTGTAGGGCTCGATCGATTCATTGTTTCCCAGAATTTGAGCTGTGGA 8009 Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACG 106029 || ||||||||||| || | | |||||||||||| Sbjct 8008 AGCCGTTGGCATTGGGGCGAGAAGAAGACTGTTACG 7973 >seq2468 Length=4028 Score = 98.7 bits (108), Expect = 1e-15 Identities = 279/422 (66%), Gaps = 14/422 (3%) Strand=Plus/Plus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATT--TGAGAAGCATAGGCCTGGCATGAGAC 117343 ||||| || |||||||| ||||| |||||||| || || || || |||||||| | Sbjct 3124 TGGAGTCCTTCATCTCGTGAAATTAGTTCATTGCTGTGAGTCAAC--CCAGGCATGAGTC 3181 Query 117344 CCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACA 117402 | ||||||||||||||| |||| || ||| || || |||||||| ||||| || ||||| Sbjct 3182 CACGCTTCTTCAACCAAAAAATGGCAGCA-AACGATCCGGAGAAAAAGATTCCTTCCACG 3240 Query 117403 CACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATT 117462 ||||| || | | ||| | || || | ||| ||| |||| | Sbjct 3241 GCAGCAAAAGCGATCACGCGAATTCCAAACGAAGCATTCTTATCTCCAATCCATCGGAGA 3300 Query 117463 GCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTC 117522 ||||| | || ||||||| ||| || || | ||| || || | ||| | | ||| Sbjct 3301 GCCCAGTCGGCTTTCTTCTTAATGCAGGGAAACTCTTGAATAGCATTAAAGAGCGTGTTC 3360 Query 117523 TTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACC 117582 | |||| | ||| ||| |||| || |||| |||||||| | ||| ||||| Sbjct 3361 CTCTCAGTTAGATCGGTAACGTATGCTTCGATCATCTTTGAATACATCTCGGAATGAA-- 3418 Query 117583 ATTTCATT--ATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGCACTTC 117638 ||| || | |||| || | |||||| ||| ||||||| |||| |||||| Sbjct 3419 --TTCCTTCGACGGCAATCTGGAAACTGTAGAACGAGAGCGCTTCAGGCATCTTCACTTC 3476 Query 117639 ATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGC 117698 | | ||| | | || ||| || || |||||||| || ||||||| || || Sbjct 3477 CTGTGTAAATCGCTCAACGAGATTTTCGTTTACGATTCCATCTGAAGCAGCAAAAAACGC 3536 Query 117699 CA 117700 || Sbjct 3537 CA 3538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589875694920480