Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_015295.1 Length=47279 Score E Sequences producing significant alignments: (Bits) Value seq2795 147 7e-31 >seq2795 Length=11366 Score = 147 bits (162), Expect = 7e-31 Identities = 222/315 (70%), Gaps = 8/315 (3%) Strand=Plus/Minus Query 33951 TTTATTCTTTTTAACCCGCCGTGGTCGATAGCATAGAGCTTCCCATCAACTAtttttttA 34010 || |||||||| | || | || | || || |||| || ||||| || ||||||||| Sbjct 11308 TTAATTCTTTTCCATCCATCTTGATTAATTGCGTAGACTTTTCCATCTACAATTTTTTTA 11249 Query 34011 TTGTTGGTATCTACTGCAACAGTTGTACCGTCAGGGATAATAGGCTCCATGCTATTCCCG 34070 | ||| || | ||||| || | || | ||| || | || |||||||||| ||| Sbjct 11248 TCGTTACAATTAATAGCAACGGTGGCTCCATTAGGTATCAGTGGTTCCATGCTATCCCCT 11189 Query 34071 GTGGCAGGAAAGCATAGCACCCCTTCGCCGCTTGAATTTGCACCAACTCTGCGAAGAGTG 34130 | || ||||| || ||||| || ||| | || || || ||||| | || |||| Sbjct 11188 CTCGCCGGAAAACACAGCACTCCGGTGCCATCAGTGTTGGCTCCTACTCTCCTAAAAGTG 11129 Query 34131 GCCTTTGAAAATCTCAACATAAACCCATTATGATCTTCGCTGCTAAATG----TCCCATC 34186 || || |||||||||||| |||| || || | || || | |||| | ||| Sbjct 11128 GCTTTGGAAAATCTCAACTTAAAGCCGTTGTAGTCCACG----TCAATGCACTTACCACT 11073 Query 34187 ACCACAAGCGAACTCGATATCCTTCAAAAAATGAACCTCTACTTCATCGTCGTCTAGAGG 34246 ||||||||| ||||| ||||| |||||||| |||||||||||||||| || |||| ||| Sbjct 11072 ACCACAAGCAAACTCTATATCTTTCAAAAATGGAACCTCTACTTCATCATCTTCTAAAGG 11013 Query 34247 CGTTTCATTATCCCA 34261 |||| ||||||| Sbjct 11012 TGTTTTGCTATCCCA 10998 Score = 82.4 bits (90), Expect = 2e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 42694 GCTAACCCGCCAGACAAACGCCGACGCGACCTCGACAACATGCTCAAAGCTCCTTTTGAC 42753 || || || ||||||| ||| | | |||||||| ||| ||| ||||| ||| ||| Sbjct 3453 GCCAATCCCCCAGACAGACGACAGAGAGACCTCGATAACCTGCCTAAAGCGGTTTTCGAC 3394 Query 42754 TCGCTGACCCACGCAGGGTTCATGTGTGACGACGAGCAGATTGACGATTTCAGAATAATT 42813 |||||||| || || || ||| | ||| ||| | ||| |||| || | || || | Sbjct 3393 TCGCTGACTCATGCTGGATTCTGGGCTGATGACAATCAGGTTGATTATATGAGCATCAAA 3334 Query 42814 CGCGGCGAAAGAGTTAAAGGTGGCT 42838 ||||||||| | ||||| ||||||| Sbjct 3333 CGCGGCGAACGGGTTAAGGGTGGCT 3309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151145615408184