Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6327 141 1e-28 seq2468 134 2e-26 >seq6327 Length=14581 Score = 141 bits (156), Expect = 1e-28 Identities = 325/485 (67%), Gaps = 6/485 (1%) Strand=Plus/Minus Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 || ||||| |||||||| | || | |||||||| || || |||| | ||| |||| Sbjct 4561 TTGTTACCGCCTTGATCGACGTAACGAGCAGTATTATTGTACACTCGGAGCATAGGGATT 4502 Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT--ATTAC 48471 | |||||| ||| | ||||||||||| | || ||||| || | || | | | Sbjct 4501 AAACCATTCGATGTTCCATTGGTTCCAGCGATCATTGTTCCAGATGCGCGAATGCAATGC 4442 Query 48472 TAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTAT 48531 ||| | | || ||||||||||| || || || || |||||| | || || | Sbjct 4441 GCATTTAGA--CCAATACCACCTGCTGACTTCGAAATAAGGGCACACTGCCAGAGAGTTT 4384 Query 48532 CATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCG 48591 ||||| || || || ||| || ||| | | || || ||| |||||| | Sbjct 4383 TGTAAATCCCATCAATTGAATCGTCATGCATCGTCAGGAGGAAGCAAGAGCTCATTTGTG 4324 Query 48592 GATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATA 48651 | | |||||||||| ||| || | ||| ||||| |||||| | ||||| ||| || | Sbjct 4323 GTTTGCAAGTTCCTGCATTGAAAAGTGTAGGAGAAGCATGAGTGAACCAGCGCTCGGACA 4264 Query 48652 ACAATTTATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACA 48710 ||| || || ||||| ||| | | ||| ||||| | ||| || || || | || ||| Sbjct 4263 TCAAATTGTAGGTTTCGATAGCGGCATCGATATCTTCCTTG-TGAATTCCAACAGCGACA 4205 Query 48711 CGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGAT 48770 ||||| | || || |||||| | || |||| | || ||||| || | |||||| Sbjct 4204 CGCATAAGCAAATGTTGAGGACGCTCGACAACCTGTCCATCCATTTTTAACAAATATGAC 4145 Query 48771 TTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGAT 48830 ||||| ||||| ||||| ||||| ||||||| || || |||| | ||| || Sbjct 4144 CGCTCCAAAGTTTTGAAACCGAAATATGTGTATGAGAAATCCCGGTCATACACAATAGAA 4085 Query 48831 GAATT 48835 ||||| Sbjct 4084 GAATT 4080 Score = 136 bits (150), Expect = 4e-27 Identities = 324/485 (67%), Gaps = 6/485 (1%) Strand=Plus/Minus Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 || ||||| || ||||| | || | |||||||| || || |||| | ||| || | Sbjct 5941 TTGTTACCGCCCTGATCGACGTAACGTGCAGTATTATTGTACACTCGGAGCATAGGAATC 5882 Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT--ATTAC 48471 | |||||| ||| ||||||||||||| | ||| ||||| || | || | | Sbjct 5881 AAACCATTCGATGTACCATTGGTTCCAGCAATCATTGTTCCAGATGCGCGAATGCAATGT 5822 Query 48472 TAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTAT 48531 ||| | || ||||||||||| || || || || |||||| | ||| || | Sbjct 5821 GCATTTAGG--CCAATACCACCTGCTGACTTTGAAATGAGGGCACACTGCCAAAGAGTCT 5764 Query 48532 CATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCG 48591 | || || || || ||| || ||| | || ||||| ||| |||||| | Sbjct 5763 TGAAGATCCCATCAATTGAATCGTCATGCATCGTCAAGAGAAAGCAAGAGCTCATTTGTG 5704 Query 48592 GATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATA 48651 | | ||||||||||| ||| || | ||| ||||| |||||| | ||||| || || | Sbjct 5703 GTTTACAAGTTCCTGCATTGAAAAGTGTGGGAGAAGCATGAGTGAACCAGCGATCGGACA 5644 Query 48652 ACAATTTATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACA 48710 ||| || || ||||| ||| | | || ||||| | ||| || || || | | ||| Sbjct 5643 TCAAATTGTAGGTTTCGATAGCGGCCTCGATATCTTCCTTG-TGAATTCCAACGGCGACA 5585 Query 48711 CGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGAT 48770 ||||| | || || |||||| | ||||||| || |||||| || | |||||| Sbjct 5584 CGCATAAGCAAATGTTGAGGACGCTCAACAACCCGTCCATCTATTTTTAACAAATATGAC 5525 Query 48771 TTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGAT 48830 ||||| ||||| ||||| |||||| ||||||| || || |||| | ||| || Sbjct 5524 CGCTCCAAAGTTTTGAAACCGAAATAGGTGTATGAGAAATCTCGGTCATACACAATAGAA 5465 Query 48831 GAATT 48835 ||||| Sbjct 5464 GAATT 5460 Score = 127 bits (140), Expect = 2e-24 Identities = 386/597 (65%), Gaps = 29/597 (5%) Strand=Plus/Minus Query 47084 ATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCT 47143 ||| || |||| | ||||||||||||||||| || ||| ||||| || || || | Sbjct 8344 ATAGCTTGGTTTCGCCATATGAATATTAAGAGACTGCGACTGGTCAATGAAGGCCCCACG 8285 Query 47144 ATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTG 47203 ||||| ||||| || | ||| || |||| | || |||||||| || || || | | Sbjct 8284 GTCAGCAGCCATTTCAATGATATCCTTTTGAGAAATTTCCCATACAGTCTTGTACAGGTT 8225 Query 47204 TTTAATGTCTTCTGGGAGATTAGT-ATT--TTGAATAGATCCTCCgttttctataatttt 47260 || | ||| | ||| | | || ||| ||| || ||||| | | | || ||| | Sbjct 8224 TTGCAAGTCCTTTGGAATTTCAGCGATTCCTTGGATCGATCCACTCTGCGCAATGATTCT 8165 Query 47261 gtttttta-att--catttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGG 47317 ||||| | ||| | || ||| | || ||||| | || | ||||| || Sbjct 8164 ATTTTTCAGATTGTCGTT---CCATAAGTTAAGTTCAACGAGATCCTTCAGCAGATGGGG 8108 Query 47318 ATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGG 47377 |||||||||||| ||||| || |||| || | || |||| || || || || || Sbjct 8107 ATTAACAATTTGGAATTCACCGGATAAAACGCGTCGAGTATAGATGTTGGACGTGTAGGG 8048 Query 47378 TTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAAC 47437 || || |||||||| ||||| | ||||||||| || || || || ||||| | || | Sbjct 8047 CTCGATCGATTCATTGTTTCCCAGAATTTGAGCTGTGGAAGCCGTTGGCATTGGGGCGAG 7988 Query 47438 TAATAAG-CTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCC 47496 || ||| || || | ||||||| || || | | ||||| | Sbjct 7987 -AAGAAGACTGTTACGCACTCCATGCTTCGCAATTTTCTCCTTCAGAGCTACCCAATTGC 7929 Query 47497 AAAGATCTGATGGAACAAC------------------ATTCCAAAAATCATATTGAAGAA 47538 | | |||| |||||||| |||||| | |||||||| |||| Sbjct 7928 ACTGGTCTGTAGGAACAACTGGCTTTCCATCTTCTGTATTCCACATTTCATATTGGAGAA 7869 Query 47539 TTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTT 47598 |||||| |||| ||||| || | || || | ||||| ||| ||| | ||| |||| Sbjct 7868 TTCCTTGGCTTACTGGAGATCCTTGGTACGTCTCATAAGTACCATATTTCTCAGCTAGTT 7809 Query 47599 CACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGAT 47655 |||| ||| || | |||| || || || |||||||||||| | |||| |||| Sbjct 7808 CACAGGATGCCTCAAGAGCACCATGGTAAATGGTTTCAAATATTCTCTTGTTGAGAT 7752 >seq2468 Length=4028 Score = 134 bits (148), Expect = 2e-26 Identities = 409/627 (65%), Gaps = 14/627 (2%) Strand=Plus/Plus Query 18787 AGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATT 18846 ||||| ||| || ||| ||| || || || ||| | | |||||||||| || || Sbjct 2935 AGTAGATGATCAGCAACATATTCGATGTACTTGGACATGAGAACACAATTCATACCGATC 2994 Query 18847 AATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATA 18906 | | ||||| || | || || || ||||||| ||||||| || || || ||| Sbjct 2995 ATGTCGACAGGAAGGGACTCGGTGAGGTATTCTTGCTCTATATGCACAGCTTCCCGTATG 3054 Query 18907 ATAG-ATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGC 18965 || ||||| || || | |||| | ||| | ||| ||||||||||||| Sbjct 3055 ATTTCATACA-CTTGCTCGTTGCTAGGCTTCTGGTCAAGGTATTTGTACATCAAACATGC 3113 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025 ||||| | ||| ||||| || |||| || | |||||| || || ||||| Sbjct 3114 GAAATCTCGATGGAGTCCTTCATCTCGTGAAATTAGTTCATTGCTGTGAGTCAACCCAGG 3173 Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACC 19085 ||| ||||| | || || ||||| || || | |||||| ||||| || || || || || Sbjct 3174 CATGAGTCCACGCTTCTTCAACCAAAAAATGGCAGCAAACGATCCGGAGAAAAAGATTCC 3233 Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCA 19145 ||| || || |||||||| | | | |||| | ||||| |||| |||||| Sbjct 3234 TTCCACGGCAGCAAAAGCGATCACGCGAATTCCAAACGAAGCATTCTTATCTCCAATCCA 3293 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT---ATAGAATTAAA 19202 | || ||||| || || ||||| || | || || | |||| |||| |||||| Sbjct 3294 TCGGAGAGCCCAGTCGGCTTTCTTCTTAATGCAGGGAA---ACTCTTGAATAGCATTAAA 3350 Query 19203 TAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCA---ATAAACTGTACAT 19259 || | | |||| | ||| |||| ||||| || |||| | || ||||| Sbjct 3351 GAGCGTGTTCCTCTCAGTTAGATCGGTAACGTATGCTTCGATCATCTTTGAA---TACAT 3407 Query 19260 TTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTAT 19319 || |||||||| ||| | || ||||| || | ||| || | ||||| | || Sbjct 3408 CTCGGAATGAATTCCTTCGACGGCAATCTGGAAACTGTAGAACGAGAGCGCTTCAGGCAT 3467 Query 19320 CTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGC 19379 || ||||| ||||| || || | |||||| || || |||||||| ||| || Sbjct 3468 CTTCACTTCCTGTGTAAATCGCTCAACGAGATTTTCGTTTACGATTCCATCTGAAGCAGC 3527 Query 19380 AAAAAATGCTAATACATGTTTAATAAA 19406 |||||| || || ||| | |||||| Sbjct 3528 AAAAAACGCCAAAACACGGGAAATAAA 3554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562008660317280